RNA id: AMCG00001960


Basic Information

Item Value
RNA id AMCG00001960
length 1260
RNA type mRNA
GC content 0.60
exon number 13
gene id AMCG00001960
representative False

Chromosome Information

Item Value
chromosome id PESF01000029.1
NCBI id PESF01000029.1
chromosome length 194549
location 23966 ~ 87036 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGGGTTTCTTCAATGCACAGATGCGTCTGCAGGGGCTGACTCAGGGCCCCGGGAACCCAGTGCTGGCCGTGCAGATCAAGCAGGACAGGAACTTCGCCTTCCTGGAGGTGACTGACCTGCTGAGCGCCGCACTGACCGCCACACTGCCTGACCAGCTGACTACACtaaaGAGGGATGATGATGAGTATGAGATCTCGATCCCATTCGAGGACAATCACTTCGAGCCGCCTGTCTACTTCAACAGCAATGAGCAGAACTTTGAGGCGCTCAAAATGCTAACCCACCCCAAGACAGTGCAcGCTCAAATCCCTAACCCACCCCAAGACAGTGCAGTGAGtCGCTCGCCTCACcgtgagaagaagaagaaggtcaGGAAGTACTGGGATGTCCCTCCGCCCGGGTTCGAGCACATCACCCCCATGCAGTACAAGGCAATGCAGGcGGCCGGTCAGATTCCGGCCACTGCACTCCTCCCCACAATGACGCCGGACGGTCTGGCTGTCACTCCTACGCCCGTCCCCGTGGCCCCTGGGAACCCAGTGCTGGCCGTGCAGATCAACCAGGACAAGAACTTCGCCTTCCTGGAGtTCCGCTCGGTGGATGAGACCACGCAGGCCATGGCATTTGATGGGATCATTTTCCAGGGCCAGAGCCTGAAGATCCGCCGGCCACATGACTACCAGCCCCTGCCTGGCATGAGCGAGAACCCCAGCGTCTACGTGCCCGGTCTGTCCCTGtttctgtccctgtctctctccctctgtccctgtctctctctaccTGGCCTGAGCGAGAACCCCAGCGCCTATGTTCCCGGTGTGGTCTCCACCGTGGGCTACGCCTTCTGCGAGTATGTGGACGTCAATGTCAGTGACCAGGCGATTGCCGGGCTGAACGGGATGCAGCTCGGTGACAAGAAGCTTCTGGTGCAGCGGGCCAGCGTGGGTGCCAAGAACGCCACTCTGACCAGTATAAACCAGACGCCAGTGACGCTGCAGGTGCCAGGCCTGGTGAGTGGCTCGGTGGTGCAGATGGGCGGGCTGCCCACGGAGGTGCTGTGCCTCATGAACATGGTGGCGCCTGAGGAGCTGCTGGACGATGACGAGTACGAGGAGATCGTGGAGGACGTGCGTGACGAGTGCAGCAAGTACGGCCAGAAGGCCATGCAGGGTCTGACCGGCCGCAAGTTCGCCAACCGTGTCGTTGTCACCAAATACTGCGACCCTGACGCCTACCACCGCAGGGACTTTTGgtag

Function

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203781 lncRNA upstream 2297 36375 ~ 38290 (+) False AMCG00001960
TU203856 lncRNA downstream 129358 177678 ~ 178631 (+) True G161902
AMCG00001959 mRNA upstream 16655 22699 ~ 23932 (+) True AMCG00001959
AMCG00001961 mRNA upstream 23817 12425 ~ 16770 (+) True AMCG00001961
AMCG00001958 mRNA upstream 28169 10001 ~ 12418 (+) True AMCG00001958

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00028828 False 2665 mRNA 0.45 13 NC_007130.7 10299002 ~ 10324318 (-)
grasscarp (Ctenopharyngodon idella) CI01000321_03749658_03759359.mRNA True 1629 mRNA 0.49 11 CI01000321 3749658 ~ 3759645 (+)