RNA id: AMCG00002791


Basic Information

Item Value
RNA id AMCG00002791
length 3036
RNA type mRNA
GC content 0.51
exon number 10
gene id AMCG00002791
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 2660906 ~ 2671073 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGGGACTACAATTCCCGAGAGCCCCAGCGAGGGCTCGGCGGCCGCGGGGGCTTGTGGGATAGGTGGGGATGTTTCCATCATGGCGGCTTCCATTTCGGGCTACACTTTCAGTTCGGTGTGTTATCACAGCGCCAACAGCAACTCGGATCACgaAGGTTTCCTGTTAGGAGAAGTAAGGCAAGAGGAGACTTTCAGCATCAGCGATTCGCAGATTAGCAACACCGAATTTCTGCAAGTAGTCGAAGTCCATAACCATGAGCCGTGCGCACATCTTTTTAGCTTTTATGACTACGCAGGTAAAGTCAGTGAGGAGAAACTCAACAGAATCCTCAAGGACAGAAGAAAAAACGTCATTGGCTGGTATCGGTTCAGGAGGAACACGCAGCAGCAGATGTCCTTCAGGGAGCAGATCATCCACAAGCAGCTGACCCACATTCTGGGCATGCCCGACCTCGTCTTCCTCCTCTTCAGTTTCATCTCCACGGCCAATAACTCTACGCACGCGCTTGAGTATGTGCTCTTCAGACCCAACAGAAGGTACAACCAGAGGGTTTCTCTCAGCATCCCCAACCTGGGCAACACCAGCCAGCAGGAGTACAAAGTGTCTTCTGTCCCGAACACGTCGTGGAACTACGCCAAGGTGATCAAGGAGCACGGCGCTGAATTCTTTGACAAGGATGGAGTCATGAAGGACATCAGAACCATCTTCCAGgtgtacagtgtgttacaggAGAAGGTCCAGGCGGTCTGCGCCGAGGTGGAGCAGAGCGAAAGTGTCAAAGAAAAGATTCAAGACGAAGTGAACAAACTGAAACAGCAGATCACTCTCAGGAAAAGGAAAAgcgaagaggaagagagaaGAATCCAGGAAGTGGCGGCAGCGGCAGCAGTGGCAGAAACAGTCGAGGACTCGGACTCAGAGCTTCCCCCCACCTCCAGGGTTGTATTCCCTGAGGCAGCACCGGAGAGGCCCGGCCCGGAGAGACCCGGCCCCTCGGACACGCCTCCCCCGTACGCAGATATGGTTCCCCGGGACGCCCCAGTAGCGGGCAGCTCAGAGCCCAGCACGGTGCTTCTGCCCCGCCCTCAGGCGGTGGGCTCCTCGGACCACGCGCCCCTGCCCAGCCTGCCGATCAGCCACGGCGCCGGTGCGGAGTACTCAGGGAACGGGGACGGGTCCAGCACTGACTCCTCGGACAGGCGGGCGGCCGGACAGGAGGACGGTGacgaagaggaggaagaggacagcagcagtgagccGGAGATCTCGACCCAGGGGCCCTCAGAGTCATCCGACGGGGAAGTGCTGGCGACAGCCCAGGGGCGGCCGGCTGCCCTGAGGCCCGACGGAGACGCCCGCAGCTCGCAGACCTCTCAGATCTGAGCGCCGACCTGTGCTGCCAgatgggaggggagggggttctGAACCGGATGAGGGATTTATCCGTTTGAGAAAAGGACAGAGGATTTAACTTCTCAATGTTGACCGCATGACAACAGGACGCGTAGAAGAGGAGCACACGGCTCTGgggaatgtttgtgttttggtttgttttaaatttggtcCCCATCCGTGGGAAGGCGGGACTCCAGCGCAGCCCGGAGAGCGAGGCCGGCGCCGCCCGGGGGAACGGAGGggcttttacagttttattgtttctttggGGAGGGGAGTTACTTTTATGTAAAAAGGCTGCTTGAGAAAATGAAAACGAATTAAACCCTTCCGGTCGGTCGGTGCCACATTGAGGCTAGGTTTGGTTGTGCCAGGAACACAACCTGCCCTTCCTCAATGGGTCTGCTGTCTGTTAATGACCTAGATAATCAAATCATACCATTACCTCTTGCACTATTTTGCcttctttttacatttatttaagaggaaaagggaaaacaaagttGTGTGCGGCCTTCACCttcgttttgttttaaatgagccAAATTAGTGGTTAGTCAGTGACGTTTGGTTTAACGAAGCCTGatcagaacaaagaaaaaatatatatatattatacttgcTTTAGCTTGCACGTTTCAAGACTATTTATGTGAGCAGGACTGTCATTggcaggtttgttttgtttgttttcttaacatCGATTAGTctcttttattaataatgtgttgCCTGTTTCCTTCACCAATTGAGATTTGGGAGAATGTTATTTTAGTGATGTAAAGCAACTGGGTTGTCGATACCACAGCACAATGTAAATCTCTCGATCTTCTCCACTCACGCTGACACGACGCGCTGTTTGGTGCACTTAATTTGcaaacttttatatttttctcatgcTTTACCGATAGTTATGTTGTGCCACAAATCTGTATGCTTTAACATTTGGGGGGCTGCCAAGCTCGGTGTTTTGTGCAATGTGTGAGATCTGCAGAATAAGCGTTAAGTAGATCATGACACCCGCGGGTGAAACTTTGAAAGCTAGCACCATAAGCAGGGAAGTCTGCATATCTCCTGcttgtactactactactactactactactactactactacaactaatacTATGTGCTCCTGTTTAGGAAAGAGAGTTTCTGTTCTGTGGGTGTTGAAAGGGAAGCTCTTGCAGACCTCCAGTTGTTTGACCCAGTTTGCTACCGATGGTACGCGTTCATAACGCACAGGCCTTCCTGGATCGCCGAGTCAGGGCTCCGATTTCAAGGACGGGAAAGAGACGTGAATCGCAAAGGAAACGACAACTACCACAACCACAAGGACAAACACTTCTCACAGCTCTGGTGCCTTCCGTTTCTACAATTATATCACCGAATCAGAAAGGCGGGAGGTCCCTGCTGGCCGTTTGAGCACTGTAGGACTCGATGAAGGACTGACACTGGACAGAGACTCTGGGGCTGATTCATTCCCAAGCACAAAGTCGGATGACAAAGTACCCGAGTGTTTACTGAGAGAGAGGCGACGGGGGCTGCATCCACTATTGGAACGTGTTTTTCCACAGAAGTTTTGATTTCAGCCTCAACTTGATTTGTATGGagtaataaagtaaacattGGTTA

Function

GO: NA

KEGG:

id description
K20799 FAM175B, ABRO1; BRISC complex subunit Abro1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174435 lncRNA downstream 158592 2502113 ~ 2502314 (-) True G138678
TU174334 lncRNA downstream 576809 2083898 ~ 2084097 (-) True G138594
TU174285 lncRNA downstream 726911 1933360 ~ 1933995 (-) True G138559
TU174258 lncRNA downstream 1142853 1489562 ~ 1518053 (-) True G138535
TU174129 lncRNA downstream 1762489 895012 ~ 898417 (-) False G138430
TU174481 lncRNA upstream 20357 2691430 ~ 2691869 (-) True G138720
TU174502 lncRNA upstream 36796 2707869 ~ 2708075 (-) True G138737
TU174503 lncRNA upstream 43304 2714377 ~ 2714688 (-) True G138738
TU174507 lncRNA upstream 49339 2720412 ~ 2720704 (-) True G138742
TU174584 lncRNA upstream 389488 3060561 ~ 3113082 (-) True G138799
AMCG00002790 mRNA downstream 6496 2635291 ~ 2654410 (-) True AMCG00002790
AMCG00002785 mRNA downstream 169023 2480058 ~ 2491883 (-) True AMCG00002785
AMCG00002781 mRNA downstream 194211 2460051 ~ 2466695 (-) True AMCG00002781
AMCG00002783 mRNA downstream 210765 2445929 ~ 2450141 (-) True AMCG00002783
AMCG00002782 mRNA downstream 216317 2441871 ~ 2444589 (-) True AMCG00002782
AMCG00002799 mRNA upstream 77039 2748112 ~ 2749307 (-) True AMCG00002799
AMCG00002797 mRNA upstream 79716 2750789 ~ 2751466 (-) True AMCG00002797
AMCG00002798 mRNA upstream 87801 2758874 ~ 2759867 (-) True AMCG00002798
AMCG00002802 mRNA upstream 294921 2965994 ~ 2973796 (-) True AMCG00002802
AMCG00002807 mRNA upstream 444788 3115861 ~ 3121097 (-) True AMCG00002807
TU174137 other downstream 1735508 923010 ~ 925398 (-) False AMCG00002752
TU174135 other downstream 1736672 923010 ~ 924234 (-) True AMCG00002752
TU174136 other downstream 1736672 923010 ~ 924234 (-) False AMCG00002752
TU174097 other downstream 1839315 812745 ~ 821591 (-) False AMCG00002743
TU174098 other downstream 1849901 808155 ~ 811005 (-) False AMCG00002743
TU174506 other upstream 47135 2718208 ~ 2719419 (-) True G138741
TU174734 other upstream 1266691 3937764 ~ 3950168 (-) False AMCG00002828
TU174755 other upstream 1330577 4001650 ~ 4002804 (-) True G138932
TU175621 other upstream 4391400 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 4677738 7348811 ~ 7352821 (-) True AMCG00002945

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000189_03608917_03613975.mRNA True 1840 mRNA 0.44 9 CI01000189 3608235 ~ 3613975 (-)