RNA id: AMCG00002829


Basic Information

Item Value
RNA id AMCG00002829
length 1380
RNA type mRNA
GC content 0.68
exon number 1
gene id AMCG00002829
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 3977656 ~ 3979035 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTGAGGTGTGGTGGAAGAGCTCCGGGTCCGAGACGCGGCTGCACAGCTACACAGGCAACAGCATGGATACCTACACTGCCGCCCACAGCGCACCCGGCTCCCTCTACGTCCTCAAGCTGCAGTCTGGGGAGCTGGATACCCGGGCCTTTGTTTACCTGCAGGAGGGAGCCGGGCCCGTGGGGGCCTTCCCAGAGTTGCCCCCCGACCCACGCGTTCACACTGTGGGTGTGGGCATGACCAGCGTCACCCTGGCCTGGAGCCCCAGCCCCTCCGTCCTGAGGCCCAGCCAGAAGAGCTACCACTATTGCGTGCTGGCCAACCAGAGGCACAACTACCGGAGCCTGTGCGCAGCCAAGGAGGCAGCAAGGAaggagcgggagagggagagggagagggagcgggagagggagcgggagaaAGCCACCGTGAAGCCCTTTGTGAAAGCgtggtggtggcagcagtgGGATGCCTCTGAGCTCGGCCTGGGAGGGTTGGCTGTCACCTCATCAGTGGGTGCCGCGGTGGTGCGTCACGTGTGCAGCAGCGAGGAGAGCGTGTGCACGGTGTCAGAGCTGGCACCAGACACGCAATACTACTTTGACGTGTTCGTGGTGGACCGGGCCAACGGCACCAGTGCGGCCTACACGGGGACCTTTGCCCATACGCACCCGGAGCCCCGGCCCGCCGTGCTGCccctgggggagggggagctcCTGCGGGTGTCgctgggggggggcggggctgTGCAACTCCTCAGCTTCCGCCCGCGCGGCTGGCAGCAGAGCGCTCTCCTCACCCTGCAGAGCTGCAGCACGGGGGCGGTGCAGCTCACCAtctccagcagggggcagcagcTGGCCTCGCAGCTGCTGACCCAGGAGGTGGCGCAGGTGTGGCTGCAGGGGATGCCCTCCTATCTTGTGCAGCTGGAAACCCCACCCACGGCCTCCACCCCTGCGGCCGCCGCGGTGAAGATCCAGGCCTCCTCTGCCTACCACCGCCAGACCGCACCCCTGCTGCCCGCCAGCCTGCAGCTCAAGTCCTTCAACAAGCTGCGGGGCTGCCGCTCGGTGACGCTGGCCTGGCTGGGCACGGAGGAGAGGAGCCTGTACTGCGTGTACCGCCGGCGGCTGGGCAAGGGCAAGGCTAGGGGGGGAGCCGAGGACAGCTGTGCCGGCCCGGAGTCCCGCAGCAACGCAGAGAGGGTGCTCTGCAAGTACTTCCAGGAGCTGAACCCCCGGCGAGCAGTAACCACCGCTACCATCGGGGGGCTGGAGCCAGGCGTGGCCTACCTGTTCGACGTCTACCTGATGCGGCCCTGGGGCATCCCTGTCCGCTACCACAGCAGGGCCGTGCGCACACGCCAGGAGTGCTGA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174717 lncRNA downstream 49038 3925167 ~ 3928618 (-) True G138906
TU174679 lncRNA downstream 599618 3376248 ~ 3378038 (-) True G138873
TU174584 lncRNA downstream 864574 3060561 ~ 3113082 (-) True G138799
TU174507 lncRNA downstream 1256952 2720412 ~ 2720704 (-) True G138742
TU174503 lncRNA downstream 1262968 2714377 ~ 2714688 (-) True G138738
TU174779 lncRNA upstream 96580 4075615 ~ 4076838 (-) True G138948
TU174869 lncRNA upstream 476757 4455792 ~ 4456002 (-) True G139024
TU174870 lncRNA upstream 486919 4465954 ~ 4466189 (-) True G139025
TU174871 lncRNA upstream 497429 4476464 ~ 4476663 (-) True G139026
TU174872 lncRNA upstream 515993 4495028 ~ 4495418 (-) True G139027
AMCG00002828 mRNA downstream 24332 3928761 ~ 3953324 (-) True AMCG00002828
AMCG00002824 mRNA downstream 310459 3665449 ~ 3667197 (-) True AMCG00002824
AMCG00002819 mRNA downstream 598358 3378606 ~ 3379298 (-) True AMCG00002819
AMCG00002817 mRNA downstream 632322 3331717 ~ 3345334 (-) True AMCG00002817
AMCG00002820 mRNA downstream 648700 3304565 ~ 3328956 (-) True AMCG00002820
AMCG00002830 mRNA upstream 1784 3980819 ~ 3980998 (-) True AMCG00002830
AMCG00002837 mRNA upstream 29620 4008655 ~ 4016581 (-) True AMCG00002837
AMCG00002836 mRNA upstream 43546 4022581 ~ 4029995 (-) True AMCG00002836
AMCG00002838 mRNA upstream 55335 4034370 ~ 4035880 (-) True AMCG00002838
AMCG00002841 mRNA upstream 240141 4219176 ~ 4221061 (-) True AMCG00002841
TU174734 other downstream 27488 3937764 ~ 3950168 (-) False AMCG00002828
TU174506 other downstream 1258237 2718208 ~ 2719419 (-) True G138741
TU174137 other downstream 3052258 923010 ~ 925398 (-) False AMCG00002752
TU174135 other downstream 3053422 923010 ~ 924234 (-) True AMCG00002752
TU174136 other downstream 3053422 923010 ~ 924234 (-) False AMCG00002752
TU174755 other upstream 22615 4001650 ~ 4002804 (-) True G138932
TU175621 other upstream 3083438 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 3369776 7348811 ~ 7352821 (-) True AMCG00002945
TU175851 other upstream 3952222 7931257 ~ 7938241 (-) False AMCG00002970
TU176000 other upstream 4506326 8485361 ~ 8494596 (-) True G139933

Expression Profile