RNA id: AMCG00003221


Basic Information

Item Value
RNA id AMCG00003221
length 3663
RNA type mRNA
GC content 0.47
exon number 16
gene id AMCG00003221
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 14878748 ~ 14886460 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAGTGACGTATATTTCCCGCCATTGCGAATGGTGCCCTagagtttttgtgtgtttctgaatcTGCTTCCTATAGTGGAGAAGTGTGTTTAACAACCTACGTATTGTGAAGATTGCCTTATTCAACGCCGgagtttaaaagaaacaaagatgCCCTCTGCCCACGATTGGATTAACAGCCCTCTTAGCGTCGTGCAGGGGATCTTTACTCAGAACAGCCCCAATCCTGAGTGGGAAAAGAAAGTCGTGGAATATTTTaaagagaagttaaaggaaaaCGATGCAAGGAGCTGGGTGCCGTCTTTAAATGATGTCCCCTTGCACTATCTTAAACCTAACAGCCTGGTCAAGTTCAGGTGTATGGTTCAAGACATGTTTGACCCAGAGTTTTACATGGGAGTGTATGAAACGGTGGACCCAACCTCAAAAGCACGGGTTCTGCGATCTGGGAAATACAGGGATGTTGCGGAGTGTGGGCCTCAGCAGGAGGTTGACCTGAACTCCAGCCGCAGTGTGACTTTGGAGAGGCAGACCTTCTACTGTGTGCCTATCCCTGGGGAGTCCCCATGGGCCAAAGAGATATCCTTTTTGATTatttttttgcCCCTTTCCCCTGTTCTGAATATTGTTCTTAACTCTGTGCTGCACACCTATGCCTCAGCCAGTCAGGCCCGTGTCAGCCCTTCCACATCCTACACGCCATGCCGACGCAAGCGCAGCTATGAGGAGGACGAGGATATGGACATGCAGCCCAGCAAACAGAAGGACCAGCTCTCGGGACTGCCAGGGGGTGCAGATTCCCAGGCCAGCGGAGATTCAAAACGTCTGGAGACCGAAGCCCCTTCCATTCAGAAAAATTCAGTGCCCGGCTGCTCTTCCCCCATTGACCTCAACTTCCCACTGCCAGGAGAAAAAGGTCCAGCCTGCCTTGTGAAGGTCTATGAAGAATGGGAGGGCTTCAAGGTCAACGACATGCTGGAGGTGTATGGGATTTTGTCCGCAGACCCAGTGCTCAGCGTATTGAACGAAGAAAGGGACAATGCCGCCTCCGCCTCCCTGCTGGATCCCATGGACTGCACGGAGACCGCAGAGGAGCAGAGGGTCCACAGTCCGCCCGCGTCCCTGGTGCCCCGGCTCCATGTTGTCCTGGCGCACAAACTGGACCACAACAACCCCCTGCTGCCCACGGGTCTGACTACACAGGAACACCAGAGCTTCGTGTCCAGTTTCCTCAGCGAGGTGACCGCAGTGAGGGCGGAGCTACTGGGCTTCTTCACCCACGTGCTCCTGGGAGACAGCCTGGCAGCCGAGTACCTCATCCTGCACCTGATTTCCAACGTGTATGCGAGACGGGATGTCCTGCCGCTGGGTAAATTCGCGCTGAATCTGAGCGGCTGTCCTCGCAACACGGCCTACACCGAGCGCCTGTATCGCATCATTCAGCAGATCGTTCCTTCTTCTTTCCGCCTTGGCATGTCTCTTCACAACATGAACACCCTGCGGTTCGTTCCCCACAAGGACTACACTGCTAACCGGCTGGTGAGTGGCGTGCTGCAGCTGCCCAGGAACAGCAGTCTCTTCCTGGACGAGACGGCGCTGGAGCAGGGACAGCTGGATGCCTCAGGTGTGCAGAACCTCACTGCCCTGGGTAACCTGATCTCTTGGCAAAAGGTTGATTATGACTTTAACTTCCACCAGATGGAATTCCCCTGCAACATTAATGTGCTGATCACGTCAGAGGGCAGATCGCTGCTACCGTCAGACTGCCAGGTCCACCTGCAGCCCCAGCTCGCCCCCCCCAACATGGAGGAGTACCTGAGCGCCCTGCAGGTGGCGCTGATGCCATCGCTGCTCAACAAGTTCCGCCTCTACACCAGCCTGCTCCGGACCGTGGAGTACGGCATCTCCGAGGAGGTGACCAAGGCAGTGGAAGATGACTTCGTCGAAATGCGCAAGAATGACCCTCAGAGCATCTCAGGTGAAGACCTTCACAGGTTGCTTGTGGTTGCAAGACTGCTGTCTCTTAGTGTGGGCCAGACCACGCTTTGCCGGGAGAGGTGGCTAAGGGCAAAACACCTTGAAAGCCTGCGGAAAAACAGGACTGAGCAACAGAAGTGTATGAATGGGAATGAGCCTTAAGAGGCCGCACCAGTGGACACCTGGCCGAGGCTCCACTGACCCAGGGGACGTGGAGTGATCCTGAGCTGGTCTGGGGACGTGAGGATCCGGCCGAGGAACAAGGATTAATTGAACTCTGCAAAGTTTTGTAGAAAATTtataccaaaacattttttttttttttgcatacaagAGAATTGTGGTTGTTCACTGATCTTTAACAAACTGTTGTATGTGTCTTATTAATTCAGTCTGTTAACAAAAAAGACTCAGACTACATgtcttatatataaaacaaattggatactttttgtaatgttaaGATCTACTTGTATCTTtccatatgtttgtttttgtttcccccccttaCAAAGGATTTATTTAGGTGTAttaaagaattacattttgtatagaTGAGGGGTTTCCATAATGGTATGTTTTTAGTTTCAGTTCATTACTGAGCTACGTGAACTCTTTAGAGATTTTGAATTCCACATCTGTTTTGTAATACTATACTCTGCTGCTGTAGGGTGACACACAGGGAAGTAAGGTTGTCTATTTAAAACAAGCAGGGGGCTTCTTAATGGTTTCCCTTCTCAATAAGGgctttataaacatttaaaatggagtGTTTTTAGCAGAcgttttaaaatttaaaatgtacaaaaatgtgtatgatTCTTATAAATCTTTACTGTAGTTTGAATTGAAAGAAACTGAGCAATATTTCTTGCATCATCTCCACGTGCGATTTGTACTTGGCAACTGTGCAAGTAACGCCCTAGCTGAGGTCATAGTCTAATTTGGTTACAGATGTTTTTGTATGGATCAGAGGAAACAACtttatattacaaatttaaatcgGCAACTTTGGCATAgtttgtattacatattttggcATTAGCCATACACCACCTCTGCAAATGAGTGCCTTTACTCTTCAGCTAGTCTTGTCTAAATTAACTGGAGTATCTGCTGGACTTAATCTGTGTATAGTGTTAAGCCCCATGCgatttataaacaaattaagcTGAACGTATTGCTCATCACAAAATACCACCACTGCAACTTGTCTTTATAAAATACCTAAAGTGCATTCTCCAAGAATATGTCTGCATTAATGAAGTGCCTATTCTGCTTTTGTCACGTTACATTTTCCctgaaatttacatttacattgtttgGATTTGCTGATCTGTGGTGCCTTCCCACAAACCCTTGCAAACTTAAATCTACAGCAgtcttttaatatattaactTCCTAAGTATTCCAGTTTTGGGGTGAAGTTGCTGAACTATACTAGCTATACATCGCCTTGACATCTACCCAAAGATAACTGCCTTACCATGTAATGAAAATCAATGCTAAACTAAGCACTGAATGTACAGACTTCTTTAGCCTTCAATGCTAGATGGAGAGGAAAACCAGAGGAGTCAcaagttttaattaaagaaaaaactttgtatttttttgtatacatttgttttcctgatgtATAAGTCTCCTACCCACTTGATCAAAGCAATAAAGCCTTTCAACTCTCTA

Function

GO:

id name namespace
GO:0000084 mitotic S phase biological_process
GO:0007062 sister chromatid cohesion biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0042555 MCM complex cellular_component
GO:0005634 nucleus cellular_component
GO:0003682 chromatin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177863 lncRNA upstream 362238 14462167 ~ 14516510 (+) True G141405
TU177879 lncRNA upstream 369909 14500971 ~ 14508839 (+) True G141412
TU177856 lncRNA upstream 433393 14443857 ~ 14445355 (+) True G141401
TU177734 lncRNA upstream 747473 14122783 ~ 14131275 (+) True AMCG00003182
TU177719 lncRNA upstream 825066 14053469 ~ 14053682 (+) True G141282
TU178084 lncRNA downstream 299611 15186071 ~ 15186325 (+) True G141573
TU178085 lncRNA downstream 303523 15189983 ~ 15190345 (+) True G141574
TU178099 lncRNA downstream 330782 15217242 ~ 15217551 (+) True G141582
TU178111 lncRNA downstream 366380 15252840 ~ 15254844 (+) True G141592
TU178262 lncRNA downstream 1604966 16491426 ~ 16500980 (+) False AMCG00003257
AMCG00003216 mRNA upstream 51933 14808618 ~ 14826815 (+) True AMCG00003216
AMCG00003217 mRNA upstream 78526 14788125 ~ 14800222 (+) True AMCG00003217
AMCG00003218 mRNA upstream 113401 14737354 ~ 14765347 (+) True AMCG00003218
AMCG00003209 mRNA upstream 213185 14657397 ~ 14665563 (+) True AMCG00003209
AMCG00003212 mRNA upstream 234421 14643609 ~ 14644327 (+) True AMCG00003212
AMCG00003225 mRNA downstream 90239 14976699 ~ 14987925 (+) True AMCG00003225
AMCG00003226 mRNA downstream 107354 14993814 ~ 14999491 (+) True AMCG00003226
AMCG00003224 mRNA downstream 116350 15002810 ~ 15008216 (+) True AMCG00003224
AMCG00003228 mRNA downstream 149491 15035951 ~ 15039764 (+) True AMCG00003228
AMCG00003230 mRNA downstream 165882 15052342 ~ 15056226 (+) True AMCG00003230
TU177906 other upstream 273311 14601317 ~ 14605437 (+) False AMCG00003207
TU177803 other upstream 590006 14287807 ~ 14288742 (+) False AMCG00003195
TU177775 other upstream 694105 14180780 ~ 14184643 (+) True G141331
TU177434 other upstream 1768114 13106456 ~ 13110634 (+) True AMCG00003158
TU177338 other upstream 1995750 12878685 ~ 12882998 (+) True AMCG00003141
TU178303 other downstream 1667551 16554011 ~ 16559206 (+) False AMCG00003256
TU178585 other downstream 2789819 17676279 ~ 17678522 (+) True G141962
TU178734 other downstream 3780307 18666767 ~ 18692204 (+) False G142078
TU178857 other downstream 4649233 19535693 ~ 19537091 (+) True G142172
TU178898 other downstream 4732421 19618881 ~ 19633073 (+) False AMCG00003323

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU75188 True 742 TUCP 0.36 6 NC_048565.1 61729765 ~ 61733388 (+)
bowfin (Amia calva) TU75188 True 932 lncRNA 0.44 1 CM030127.1 5166359 ~ 5167290 (-)
tiger barb (Puntius tetrazona) TU75188 False 323 lncRNA 0.49 2 NC_056705.1 5692905 ~ 5695280 (-)