RNA id: TU175433


Basic Information

Item Value
RNA id TU175433
length 1021
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G139496
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 6157743 ~ 6158763 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttaaatttaaataatttatttttggtataaatatatatttgtatagaataaaccattattaataaaataacaatatacttGTGACCTTTTAACATAAAAGATgacaacaaaactaacaaacatacatatgaCAATAAATATGACAGTTACTGTCCAGCAGAAACATTTATACTGTTAGTGTTTAAAATATTCCTCTTCAGAAATGGGTTAATATGGCTGTTTTTATATTGGCTTGAAGAAAGGTGCCAAACAGCTTGTCCCAGTGGGTAAAGTAAGGTGCATAGTTTGATTTGAACTTCAGGTGATGGATATCGTGATGAGGAGCACCTCCAAACAGTCCAAACGGCACCAGCCTGTGAGGTGACCATGGGAAGTCATAGCCACAGTGGTCCTCCACGGACAGCCAGATGTTCACAATGAAGAAGAGCATCTCAGTCAGAGGATGGCAGTTCAGCAATACAGGATTAATTGCAGCAAAGAATCCCAAGGAGAGCGTCTCCCAGGCGCCTGAATGCTCAGTAGCCAGTGCAAACGTCAAGGTGTACTTGTGATGAACCTTATGGAAGGTTTTGTAAAGCCAGGGGACCTTGTGATGAATCAAGTGCCAGACGAAATACTGGAAATCAAATAGCAGCAGGCAGGCGATAATATCCAGTATCAGTCTGAGAATCCCCGGTGCCTCCAGCGGATAGCTGACTGGTCTCCAGTACCAGTTTAAAACAGTGAGTGgaaaaatgaacacaatgtGGTTATATACAGTCAGCACAATGCAAGTCCTTAACATTGCCCATGTGATTTGGCTCTTTGGTTGTATCTTGTACTTTGTCAAAAAATCCACTTTCCATGAAAGCATGTCCAGTATCATGTAGGGCAGGCAAAACCCCAGGTACACGAAGAATGAAAAGAGCACTGGGAAGAATGGAGACTTTAGGTAGGCTTCTTGGGCTCGGATCATGTCCCAGCTGTGCTGCAATACCAAAAAGACCTGCATTTtggctgcagtgtgtctgtgtaaaatgAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175135 lncRNA downstream 761184 5396339 ~ 5396559 (-) True G139249
TU174884 lncRNA downstream 1573571 4583865 ~ 4584172 (-) True G139039
TU174874 lncRNA downstream 1646436 4507504 ~ 4511307 (-) True G139029
TU174873 lncRNA downstream 1661381 4496162 ~ 4496362 (-) True G139028
TU174872 lncRNA downstream 1662325 4495028 ~ 4495418 (-) True G139027
TU175564 lncRNA upstream 323504 6482267 ~ 6510125 (-) True G139593
TU175618 lncRNA upstream 842902 7001665 ~ 7073536 (-) True G139639
TU175655 lncRNA upstream 1060106 7218869 ~ 7219192 (-) True G139668
TU175760 lncRNA upstream 1296781 7455544 ~ 7458491 (-) True G139752
TU175854 lncRNA upstream 1787289 7946052 ~ 7946521 (-) True G139825
AMCG00002913 mRNA downstream 13350 6142903 ~ 6144393 (-) True AMCG00002913
AMCG00002914 mRNA downstream 16731 6132834 ~ 6141012 (-) True AMCG00002914
AMCG00002905 mRNA downstream 71271 6083761 ~ 6086472 (-) True AMCG00002905
AMCG00002907 mRNA downstream 137601 6016336 ~ 6020142 (-) True AMCG00002907
AMCG00002906 mRNA downstream 158970 5974562 ~ 5998773 (-) True AMCG00002906
AMCG00002912 mRNA upstream 15135 6173898 ~ 6179201 (-) True AMCG00002912
AMCG00002919 mRNA upstream 38211 6196974 ~ 6201996 (-) True AMCG00002919
AMCG00002920 mRNA upstream 56096 6214859 ~ 6227743 (-) True AMCG00002920
AMCG00002922 mRNA upstream 138974 6297737 ~ 6319780 (-) True AMCG00002922
AMCG00002924 mRNA upstream 172887 6331650 ~ 6344823 (-) True AMCG00002924
TU174755 other downstream 2154939 4001650 ~ 4002804 (-) True G138932
TU174734 other downstream 2207575 3937764 ~ 3950168 (-) False AMCG00002828
TU174506 other downstream 3438324 2718208 ~ 2719419 (-) True G138741
TU174137 other downstream 5232345 923010 ~ 925398 (-) False AMCG00002752
TU174136 other downstream 5233509 923010 ~ 924234 (-) False AMCG00002752
TU175621 other upstream 903710 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 1190048 7348811 ~ 7352821 (-) True AMCG00002945
TU175851 other upstream 1772494 7931257 ~ 7938241 (-) False AMCG00002970
TU176000 other upstream 2326598 8485361 ~ 8494596 (-) True G139933
TU176103 other upstream 2688269 8847032 ~ 8847840 (-) True G140006

Expression Profile