RNA id: AMCG00003855


Basic Information

Item Value
RNA id AMCG00003855
length 1571
RNA type mRNA
GC content 0.35
exon number 4
gene id AMCG00003855
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 21950331 ~ 21958985 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTAAACCAGCTTTAAACCCTGAAACTGTATAGTTACATATACAcagttggagagagagagtgagactaGCAATTTGACTGGATGAGGATTGAGGAAATGAGGAACTTGTTGGCAATATGATCAAGTACATAATACTTCagttaacattttacaaagacATTCATAACCAGTATGAATATACACTGTGTCATTCTGCTCATTTTTATTAGAGAAGCTGGTACTTTGCCAGCTACAGGCTCATTCAGCCCTGACTGTGTACAATTGTCATCTAAAAATCTAATAACAATTCTCCAATGGAAGCCAGGAAAGGGAAGCAGTAGCACAACTTTGtataatgtacaatacaaactatatgGAGAAAAGAAATGGATCAATGGCTGTCAGAATATCAGATATCTTTCTTGTGATCTAACGAAGGAAATCAATTTGAAAGATGAGTATACCGGACGTGTGCGGGCAATACACAACAAAGTTTACTCGGAGTGGgTTATAGAGGAAAGTCACATGATAAACAAGCAATCCAAAATGGGCCAAAAAGATAACAAAGTTAAAGCTGATGAAATTCCAGGAATAATCAActctaaacagaaaaaaaatcagtatgTTGCCTTGCCAGCAAATCAGATCCTACCGCTGAAGACATTCAGCGCTGACACTGATGAAGTAATGACCTTGATTTCAGATGCTTTCCCAACTCAGCTGTTTTCTCAGGCACTGCAGAACTCTGAATACATTGTAGGCTTTAGCTGTACAGGAGCACCGACAGACCCAGATCTGGGATTGGTTCAGATTTATGGAACAGTTCGCGAGTATGGAAATACACTCACCACAGTAGGGCTTCATGTTTATAGAAATACTCAAGATGAACAGAACAACCAGTATGCAAATGTGCAAAACACAATTCAGACTGATCCTGTGAATGCAATCATCAATGACCAGCAAAGAAATGGGAAGACCCTCCAGCATATATACAGCAATTTATCACCTTCATCCAACAACAATGAGTATAATAACTTGGGCCAAGCCTTGCAAATCGTCAACAAAGCATACACATAGTGTCAGTTTTAAAGGAATGTTATTTTCAACTTGCTCAtacttttacaaatataataacatttttgaaattatgtgaattattgtacattattatataGCTAGAATCTTTCAAACCTAACAATCTAGCAATCTTAAGATATATAGAAATTAGATATTTGAATGCCTTTTGTACTGTAAACTGAATGCACACCTCTTGGAATCTTGATTACTCGCATAATTTTCTGGtcccttttatttttgccttatttttacatttcacattttctcctGCAATCTACATTGATAAATCAATAGCCTGGTGTGTATACCCTTGCTTGATGTTTTAtctgacaaaaatataatttgtgcaACGTTTGAGTACAGAAAGAAAGTTTTGCAGACAAAACAACTAAACTTGTAAATtccaatattttgttttttgtttgcttgatgCATTGttcagtaaatgtattttgagaaaATGCCAGCATTTGtgtgaaaagttaaaaaataaacatgaattaattCAAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4577 lncRNA upstream 48683 21890523 ~ 21901648 (+) False AMCG00003853
TU4562 lncRNA upstream 190532 21750527 ~ 21759799 (+) True G3770
TU4559 lncRNA upstream 217632 21732491 ~ 21732699 (+) True G3767
TU4549 lncRNA upstream 349471 21600632 ~ 21600860 (+) True G3757
TU4545 lncRNA upstream 351901 21595856 ~ 21598430 (+) True G3754
TU4660 lncRNA downstream 118007 22076992 ~ 22077458 (+) True G3845
TU4682 lncRNA downstream 211355 22170340 ~ 22172105 (+) True G3863
TU4690 lncRNA downstream 224258 22183243 ~ 22184811 (+) True G3871
TU4697 lncRNA downstream 238329 22197314 ~ 22200678 (+) True G3878
TU4705 lncRNA downstream 265733 22224718 ~ 22225101 (+) True G3884
AMCG00003853 mRNA upstream 48466 21890559 ~ 21901865 (+) True AMCG00003853
AMCG00003854 mRNA upstream 87532 21857490 ~ 21862799 (+) True AMCG00003854
AMCG00003847 mRNA upstream 414573 21491884 ~ 21535758 (+) True AMCG00003847
AMCG00003846 mRNA upstream 503210 21440114 ~ 21447121 (+) True AMCG00003846
AMCG00003845 mRNA upstream 511652 21348227 ~ 21438679 (+) True AMCG00003845
AMCG00003856 mRNA downstream 11511 21970496 ~ 21981590 (+) True AMCG00003856
AMCG00003861 mRNA downstream 142303 22101288 ~ 22106730 (+) True AMCG00003861
AMCG00003873 mRNA downstream 516102 22475087 ~ 22498055 (+) True AMCG00003873
AMCG00003871 mRNA downstream 554750 22513735 ~ 22523525 (+) True AMCG00003871
AMCG00003872 mRNA downstream 569374 22528359 ~ 22536293 (+) True AMCG00003872
TU4606 other upstream 26544 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 189701 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 400798 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 2581065 19368193 ~ 19369266 (+) False AMCG00003828
TU3794 other upstream 3798017 18146660 ~ 18152314 (+) True G3108
TU5028 other downstream 1751253 23710238 ~ 23713134 (+) False AMCG00003898
TU5311 other downstream 2724415 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 3835067 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 6103378 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 6103689 28062674 ~ 28067786 (+) False G4831

Expression Profile