RNA id: AMCG00003861


Basic Information

Item Value
RNA id AMCG00003861
length 1471
RNA type mRNA
GC content 0.41
exon number 5
gene id AMCG00003861
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 22101288 ~ 22106730 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCGCTGTATTTGCATACGTACTTCCGGCTCACAAAGCGCAGCAATGGCAGCCTCCTCACCGAAACCCAGCGTGAACAATATACTGCAGTTTATGAAATTAATAGGGCAGCTGAAGCGGGTGCCCAGGACCGGTTGGgtgtataataatgtaaagaaaCCGGAAAGCGTGTCAGATCACATGTACAGGATGTCTATGATGGCGTTCACTATTGAAGACCGCAAGATCAACAAAGACAGATGTATAAAAATTGCCTTGGTCCATGACCTGGCAGAATGCATTGTGGGTGATATCGCCCCTGCAGATAACATCAGCAAAGAGGAGAAGCACAGGAGAGAGGAGGAGTATGAGTACCAGACCAGTCTAGAGGCCAGGCTGGTGAAAGACCTGGACCTGTTTGAAATGATTCTACAGGCGTATGAATATGAGGTGCAGGAGAAGAGTCCCAGGCGACTGCAGGAGTTTTTCGATTCAACTAaagGCAAATTTAATCATCCAGAGGTGCTGCAATTAGTAAAGAGTTTAAATGAGGAGAGAAACTGCCAAGCAGCAGCTAGTAGCTCTGATGGTCCCAACCCCAAGGAAAGCCAATCAGACACAACCGCTCCACATCAAACCCCTGAAACTACATCATGACACTTCCACGTGACCTCGGGGATTCAGAAATCATACTCTCAGCCGATCTACACACTTGAAAGTTCAGTCCCAGGGATTCATTGCTTTCCATAGGTATAGATAAGAATTATCTGGCAAACAGTAAAGTGCAGGGTTTGTCAGCTGCAGCTGGAGGATGAGttgaagatttgatttaaatgcaaGTATTTTACTCTTTACTGGTgaaaaccccccaaaacatatttatgtttatcAGTGTTTTGACCTTGAGCAGAGTTTAAGGGTTAatgtcatacattttttaactgaattatgttcttatttttctctggTCCAACTTAAAACTCAAATAAGCATTGACAGCATAATATGACAGGtttctgttcattattttttgtggtATCAATATGGTTTCCATATCCATATATATTGGTGTCCCCAATTCCTTTTTGAAGCTGCAAAAGCCTCCTTGTGTTATGTTTTAGTAGTTAAGTTCAGATATATTTATGCTGaagcaaaaaatgtatattttactactgtacaaataaatgacatttcTTAGACACCTCTTTACACTGTTTGTTTATCTCTATATGTGTACGTTTAGGCACAGAGGAAGGTCCATGTTTATTAAATCAAGTATAACATGAACTGTAGAGCTTTCAGCCAGACTCTATTATGTGTATTCCTTGTAATCTGAGATGAcagtttaagtttttttaaggtttaagTGTGTCCTGCTACAGAATGCTAACATGAACATATTATATTCCTTAGCTTGTACGCCCTGGAGTCAGGGAGACCGGTGTGGTTTCAGCTGCTGTAATTGGTTACTTTGCTGCGTGTAGACGCTGGC

Function

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K07023 K07023; putative hydrolases of HD superfamily

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4660 lncRNA upstream 23830 22076992 ~ 22077458 (+) True G3845
TU4605 lncRNA upstream 84836 21917276 ~ 22016452 (+) True G3798
TU4577 lncRNA upstream 199640 21890523 ~ 21901648 (+) False AMCG00003853
TU4562 lncRNA upstream 341489 21750527 ~ 21759799 (+) True G3770
TU4559 lncRNA upstream 368589 21732491 ~ 21732699 (+) True G3767
TU4682 lncRNA downstream 63610 22170340 ~ 22172105 (+) True G3863
TU4690 lncRNA downstream 76513 22183243 ~ 22184811 (+) True G3871
TU4697 lncRNA downstream 90584 22197314 ~ 22200678 (+) True G3878
TU4705 lncRNA downstream 117988 22224718 ~ 22225101 (+) True G3884
TU4707 lncRNA downstream 129366 22236096 ~ 22240098 (+) True G3886
AMCG00003856 mRNA upstream 119698 21970496 ~ 21981590 (+) True AMCG00003856
AMCG00003855 mRNA upstream 142303 21950331 ~ 21958985 (+) True AMCG00003855
AMCG00003853 mRNA upstream 199423 21890559 ~ 21901865 (+) True AMCG00003853
AMCG00003854 mRNA upstream 238489 21857490 ~ 21862799 (+) True AMCG00003854
AMCG00003847 mRNA upstream 565530 21491884 ~ 21535758 (+) True AMCG00003847
AMCG00003873 mRNA downstream 368357 22475087 ~ 22498055 (+) True AMCG00003873
AMCG00003871 mRNA downstream 407005 22513735 ~ 22523525 (+) True AMCG00003871
AMCG00003872 mRNA downstream 421629 22528359 ~ 22536293 (+) True AMCG00003872
AMCG00003874 mRNA downstream 576286 22683016 ~ 22744727 (+) True AMCG00003874
AMCG00003876 mRNA downstream 717040 22823770 ~ 22829038 (+) True AMCG00003876
TU4606 other upstream 177501 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 340658 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 551755 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 2732022 19368193 ~ 19369266 (+) False AMCG00003828
TU3794 other upstream 3948974 18146660 ~ 18152314 (+) True G3108
TU5028 other downstream 1603508 23710238 ~ 23713134 (+) False AMCG00003898
TU5311 other downstream 2576670 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 3687322 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 5955633 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 5955944 28062674 ~ 28067786 (+) False G4831

Expression Profile