RNA id: AMCG00003871


Basic Information

Item Value
RNA id AMCG00003871
length 3232
RNA type mRNA
GC content 0.52
exon number 12
gene id AMCG00003871
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 22513735 ~ 22523525 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGTAGCGAGGGAGGTAGTCTTGTATCTggagaagaaaacatgtatatgaGGTTAATATTTTGGTGAATGGGCACTGCTTTCGTCAAATTTGGAGACATAAACTACTCTACTAATAACTGGTTGAGGGTCACAGCCTGCAGAGATGGTGCGGTCAAACTCCCGCTCGCACTCCTCCAGGTCCAGGTCTGGCTCTCACTCCAGCTCCAGGTCGAGGTCACGATCACGGTCCAGGAAGAAGAGATACAGTTCTAGATCTCGCTCCAGGTCTTACTCTCGCTCTCGCAGTCGAGAACGTGAGCGAAACCACCCCAGGGACTATCGGCGGGACTATCGCATGAACAGGGGCATGAGGCGGCCCTACGGGTTCCGGGGCAGGGGTAGAGGCTACTATCAAGGTGGCGGGCGCTTCCATCACCGGGGAGGGTTTCGGCCCAACTGGCAGAACCGGCGGTACTCCCGCAGCCCCAGGAGGGGGCGCTCCCGTTCCAGGACCCCGAAGCGCAGGTCCACGTCTCAGAGGTCCCGCAGCAAATCCCACCACTCGGGCCGCTCCTCCGCGTCGCGCCGCTCCTCCAGCTCCCGCTCCTCCTCTCCCTACAGCCGGTCTCCCGCCCCTAAGAGACGTGGCTCCCACGACAAAGCTGCCAAGAAATCGGAGGCAAGCAAGGAAGGGGGGGCAGGCCGGcagatggaggaggagaagggggatGGTAAGAGTGAGCAGCCAGCTGGCACCTCCTCTGCCAAATCTGACCTGAAAAGGACACCGGCTGTCATCACAGAGAGCTGGATTGGCATTTCGGCTTATAACGACACCAGCCCCCATCGGAGCCCCTCTCCCATCCCCACCCCACCGAGTCAGAGCTCCTCCCGCTCTGATACAGTGGCCATCCAGGTGGCCTCCAAAATCAGCCCCCCCTCGCTGCCTTCCCTGCGCTTACATTCCCTGCAGCACAGCCCCGACAGCCCCCTGGGCCACTACAGCCCCTCACACAGCCCCCCATATCGCACCTCCCCAAGGAGGAGCCCCTCTAAAGGTTTCTCAGCCGTCCACAGCAGAGGGTTTTTCCCCAACAGTGATGAGCAGGATCTCCCAAAAGGTGGAAAGTACCTCAAAAGGTACAACGAAGAGGATGGAGGCAGAGCATACCTTCATGAGAGGGGGAATGGGCGAGACAAAGACTCTCAGAAAGACAGGGTGCCAGAGAAAGGCCGGGGTGAGGGAGAGTGGGGTGACCAGAGTGGCTTAGATCTAGGGGTTAAAAAGGAGAGCGAGAAGGTGCCCTTCCTGGGGGACTCTCCTGAagcggaggaggaggatgagtcCCAGGCCTACAGACAGCCATATCAGTTCAAAGTCACCAGTCAGGTAGAGCAGATTAAAAGCTACCCGATTGAGTCCCGTTGGAACGTGGAAAACCAGGATGAGGGTGGCAAGTACAAAATGAAAAGCTCCAAGGGGGAGAGGGATTATGATAGGTTTGTGGAGGACAGGATGTTCAAATTCAAGGAGCCAGGCTACATGGGGGACAGACTGAATAAAGACAAGTATAGCGAGGAGGCGCAGGGTGCAGAGAAGTATGACGAGAGGATAACCATAAAGAGAGACACTGTGTCGCCACAGCAGCTCAAGGCCGAGCGGCTCAGGGAGCTTTTTGACCAGAGTCCTCTGCTGCAAAAGACATTGGATGTGAGGGAGAAGGCTTCCCTCAGGGATGGGAGTCCACCGAAGGTTAAAATGGTACCCGGTGAGGCCTCTCGTCCCGAGGTGAAATTGAAACTGACTCCCTTGGCCTACGAAGACCCGAGCCCGGGCACTTCTTTGACAAGTGACAGGTCGCTTGCTAGTGCCCTCGTCCATTCCTCCAAGAGGGAGCAAGGCTTCCGCTCCATCTTTGACCACATTAAGAGGCCTCAGGCGTACAAAAATTCGGCAGAGTCCTTTATTCAGCACATTGTTTCTTTGGTTCATCATGTCAAAGAGCATTACTTCAAGTCAACAGGAACGACCCTCCATGAGCGCTTCACTGTCTATCAGAAAGCTGCTGAAGGGCATGAAGCCAGACAAAAGAGTCCCGAAATCCACAGgAGGATTGATGTCTCCCCCAGTGCTTTTAGGAAGGAGAGAAACTTGAAAGAAGAAAGCCACAAGAGTGAAAAAAAATCGAGGTGCGATGCGGCCGACTTGAGGCACGATATTGATCGGCGCCGGAAGGAGAGGAGCCGGGAACGAGATGACTGCAAAGGTTCCCGAGAGCCAAGCCCATCGAGAAAGCTGGACAAACTAAGCAAAGAATTCAAGGACTACAAAGATTACAAATCCTACAAGGATGACAGCAAACACAAAAGCAAGGAGAGAGACCGCTCAAGatcctcttcctcatcctccGTGTCCCGCGAAGACAAGGACTGCCGGAAAGAACGGGATGAAGAGTACAAGTCTCATCACGAGCAGAAAGACTACGCCGGCTACCAGGGAGGAAACCGAGCCAGGGGAACTTTTCAATTTCGCATCAGAGGGGGGAGAGGCCGTGGCAGAGGGGTCTTTTCAGGACCCAATCCTGGGCCTAGTGTTCCCAACGTCCCTTTCCAGAAGAGACCCAAAGAAGAGGAATGGGACCCAGAATACACCCCAAAGAGCAAGAAGTATTTTCTGCATGATGACAGGGATGATGGTGTTGATTACTGGGCCAAAAGAGGAAGGGGACGTGGCATCTTCCAGCGAGGCAGAGGGCGGTTCAGTTTCAAAAAGTCCAGCAGCAGTCCCAAATGGACACATGATAAATATCAGTGTGAGGGAAATGTGGAAGACGACGAGGACGATGTAGAGAACAGCGAAGAGAGGAAAGATAAACGAAAAGATGAGAAGGAATGACGAGCTCAACGGAGAAGATGAAACGTGATGTCTTCAATGCCACTCAATCAAATgagcatatttttttttgtattttttattgtgattttgttcTATATCAGTAGTACTTTGTTTGATCaccattttgaaatgattttccCTGTATCAGACTAAATGTTAGTGGTCTATATACAAAGTTAGATGCTATCTGTTAAACTTTTGTGAGATCTTCCCTTTGAAACAGGCTTTTAGAATGGAAGTAGTTGCATTCAATGTAAGTTGGTGACTTAATAAAATACTCTTAACGGTTTTATGCTGTTGTGTATGTTTAAGTTTCAATAGGACATACTGCATATgaatttcaactttttttttt

Function

GO: NA

KEGG:

id description
K13087 BCLAF1; bcl2 associated transcription factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4741 lncRNA upstream 11906 22500917 ~ 22501829 (+) True G3915
TU4740 lncRNA upstream 12909 22500527 ~ 22500826 (+) True G3914
TU4730 lncRNA upstream 108881 22402604 ~ 22404854 (+) True G3907
TU4707 lncRNA upstream 273637 22236096 ~ 22240098 (+) True G3886
TU4705 lncRNA upstream 288634 22224718 ~ 22225101 (+) True G3884
TU4802 lncRNA downstream 205197 22728722 ~ 22769227 (+) False AMCG00003874
TU4834 lncRNA downstream 345353 22868878 ~ 22869139 (+) True G3991
TU4909 lncRNA downstream 742745 23266270 ~ 23345005 (+) True G4057
TU4923 lncRNA downstream 791809 23315334 ~ 23322675 (+) True G4059
TU4910 lncRNA downstream 792103 23315628 ~ 23319122 (+) False G4058
AMCG00003873 mRNA upstream 15680 22475087 ~ 22498055 (+) True AMCG00003873
AMCG00003861 mRNA upstream 407005 22101288 ~ 22106730 (+) True AMCG00003861
AMCG00003856 mRNA upstream 532145 21970496 ~ 21981590 (+) True AMCG00003856
AMCG00003855 mRNA upstream 554750 21950331 ~ 21958985 (+) True AMCG00003855
AMCG00003853 mRNA upstream 611870 21890559 ~ 21901865 (+) True AMCG00003853
AMCG00003872 mRNA downstream 4834 22528359 ~ 22536293 (+) True AMCG00003872
AMCG00003874 mRNA downstream 159491 22683016 ~ 22744727 (+) True AMCG00003874
AMCG00003876 mRNA downstream 300245 22823770 ~ 22829038 (+) True AMCG00003876
AMCG00003878 mRNA downstream 320818 22844343 ~ 22859805 (+) True AMCG00003878
AMCG00003877 mRNA downstream 347980 22871505 ~ 22882861 (+) True AMCG00003877
TU4606 other upstream 589948 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 753105 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 964202 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 3144469 19368193 ~ 19369266 (+) False AMCG00003828
TU3794 other upstream 4361421 18146660 ~ 18152314 (+) True G3108
TU5028 other downstream 1186713 23710238 ~ 23713134 (+) False AMCG00003898
TU5311 other downstream 2159875 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 3270527 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 5538838 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 5539149 28062674 ~ 28067786 (+) False G4831

Expression Profile