RNA id: TU4802


Basic Information

Item Value
RNA id TU4802
length 2054
lncRNA type sense_over
GC content 0.44
exon number 8
gene id AMCG00003874
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 22683016 ~ 22769227 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGCACACAAGAGAGCTGTTGTGCTCTTTGCCTGAAGGAAGTTCTTTTCCCTTCTGCCTTGTAAAGGTCGTCTCAAATCTCTCGCTTCCTGCTCCATCGCTGCTCTCACCACACTCAAAGCTCAGGCTCCCCGGCTCTCTGGGCACTCAGCTGACTTCACAGCCATCCCTGACCTCACACAGCCgagGTTTCAGCCCTGTAGGACAACGCTTCAGTCGTGCCCCTTCTCTTAAACTACAAACGAGTTTTGGTGATCCTTCAGCTTCAGTTCTTACCGTACAGGCCGATTCCTTTGTGCCAGTCCAGCATACaGTTGTGTCCCTCTATGACTACACAGCAAATCGATCAGATGAGTTAACCATACACCGTGGTGACATTATCCAAGTGTTGTACAAAGATAATGAGAACTGGTGGTTTGGCTGCCTGGCAAATGGACAACAAGGCTACTTCCCAGCTAATTATGTGGCCGATGAAAGGGGTTTTGAAGAGGAGCTGTCCCACACAGAGTCCAATGACCAGACAAATGAAACAGCTGAGCAATCTCCGACCCCAGCAAAGatGTCAGCAGTGATCAGTGCGTCTGGTGACCTCAAATTCATCTCTGATCACGATACAGATACAGATTCGCCAGTGCCAGTTGtccagaagaagaagaaaaagaagaagtcCATTGAAAGCAAGTCCCAAGCTGCTAGTGATACTGCTGCAGCATCTGACCCGGTGCTTCTGACGCTGCCTGCAAGAAAAAAGAGAGCGAACATCCCAGGCAAACCCGTCGCAAAAAgaggacaaacaaacaatgccTTCGAACCTGATTATTAGAACGAAATATGAGACCTGTGCCACCTCTGACACAGCATACGATACACACTGTACATCTCTCCAGTGGAAGACAGTGTGAGCAAGCTGAGTAGCAGTGCCAGCCTTAGAGTGGCATAGACATGTACTAAGCATTGTCGTTTACCGGGTTTTTAATGTTACAGTAATCTAAGAGAAAGTATAATCCTGTTTGAGAAACACCTTAGAAAAACACTTGTGTGTTTGCATAGGcctgatgttttgtttaaagacCGGCGATGATATACCAAAGCCCAGCCTGCTAAATTTTCtgttcctaacaaaaacaaacatatttttgataATTTTCTACCTTGAGCGTGGCACAGTTCATGAGTATTTTGTCAGTGTCAATAGTATACCGAAATAGAAGGTGgtcttgttttttattactaaatttaaaaggttaaatatgatttttgtattgtttgatttttaaatgattgcagTGTGTTTTTACGTCAATGTtcactatatattttacattatcatataatacaatatcaaaATAACTTAATCAATAGGTACTGCTGTGTTATAGAATTTTCACCAAATGCTAAAGATTTGTATCTGTAGAAATTactttaaatcctttttttggGTGTGATGTgaaatgtagtatttatttttattatatttttatttcatttttaattgtgctaaatgctataaaattaatttgctgattaaaaaaaactgataattataatacattcaaatgaacAGAACATGACAGTGAGACTGAGAAACTCCTTGTGTCACAGATTCTTGGATCAGAAACACTAATATTTAAAGTCATGTTTTCTAAGTCTTTAAGTAATTTGagttcaatatattttgtatgtgaaatatgGACATTAATTTTTTGttaatcagtgtttttattttattttattttattttattttttcttaagaaaTGTGCCATGGtccaaatatttcaattattgttattttcaaaaatagataagTAGTGTAAGATGTTAAACTTAATGTTggtaataaactaaaataaatccaatgGCCTTGTTATTAAGTCAGCATTATAGTCAAATATCTGTAGCACCATAGACCAGACTGAATGAGCAAATATTACCAGATATTTAAGATAAACAAATTCTTATTTCCATGTATGTGATActaattttattctgtttgttttaaaacacaatgaattGTAATAAAGCTACATTAACAgaacctaaaacaaataaattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4741 lncRNA upstream 226893 22500917 ~ 22501829 (+) True G3915
TU4740 lncRNA upstream 227896 22500527 ~ 22500826 (+) True G3914
TU4730 lncRNA upstream 323868 22402604 ~ 22404854 (+) True G3907
TU4707 lncRNA upstream 488624 22236096 ~ 22240098 (+) True G3886
TU4705 lncRNA upstream 503621 22224718 ~ 22225101 (+) True G3884
TU4834 lncRNA downstream 99651 22868878 ~ 22869139 (+) True G3991
TU4909 lncRNA downstream 497043 23266270 ~ 23345005 (+) True G4057
TU4923 lncRNA downstream 546107 23315334 ~ 23322675 (+) True G4059
TU4910 lncRNA downstream 546401 23315628 ~ 23319122 (+) False G4058
TU4913 lncRNA downstream 546401 23315628 ~ 23319122 (+) True G4058
AMCG00003872 mRNA upstream 192429 22528359 ~ 22536293 (+) True AMCG00003872
AMCG00003871 mRNA upstream 205197 22513735 ~ 22523525 (+) True AMCG00003871
AMCG00003873 mRNA upstream 230667 22475087 ~ 22498055 (+) True AMCG00003873
AMCG00003861 mRNA upstream 621992 22101288 ~ 22106730 (+) True AMCG00003861
AMCG00003856 mRNA upstream 747132 21970496 ~ 21981590 (+) True AMCG00003856
AMCG00003876 mRNA downstream 54543 22823770 ~ 22829038 (+) True AMCG00003876
AMCG00003878 mRNA downstream 75116 22844343 ~ 22859805 (+) True AMCG00003878
AMCG00003877 mRNA downstream 102278 22871505 ~ 22882861 (+) True AMCG00003877
AMCG00003879 mRNA downstream 272596 23041823 ~ 23046232 (+) True AMCG00003879
AMCG00003883 mRNA downstream 292733 23061960 ~ 23065930 (+) True AMCG00003883
TU4606 other upstream 804935 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 968092 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 1179189 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 3359456 19368193 ~ 19369266 (+) False AMCG00003828
TU3794 other upstream 4576408 18146660 ~ 18152314 (+) True G3108
TU5028 other downstream 941011 23710238 ~ 23713134 (+) False AMCG00003898
TU5311 other downstream 1914173 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 3024825 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 5293136 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 5293447 28062674 ~ 28067786 (+) False G4831

Expression Profile