RNA id: AMCG00003897


Basic Information

Item Value
RNA id AMCG00003897
length 1283
RNA type mRNA
GC content 0.43
exon number 4
gene id AMCG00003897
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 23735802 ~ 23740462 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

attattatttatgaatcaGCTGATGAAAGGCAGTGTGTGCACGTCTCCAGCAGTGAGTCTGAGCTGCAGGCGGTCTGCCCGGCGTGCGCCGTCTCTGCCAGGGATCCGGGCAGTCTTTGTCCGAGCTGCGCTGAGCACACTGCGCATGCGCCACACAGACAAGGGACCAGAAACCAAAAGGAACATGGATGAGTTTCAGACAGGAGAGGAGacTGGCTTTGTTGTTGATGAAGTTAGCTCCATTATAAAAGAGTCGGTTGAAGGGGCGATAGGAGGAAATGCCTACCAGCACAGCAGAGTGAACCAGTGGACAACCAGCGTGGTGGAGCAGTGTCTGAGCCAGCTGACCAAGCTGGGCAAGCCCTTCAAGTATATCGTGACTTGTATAATCATGCAGAAGAATGGGGCCGGCCTCCAGACTGCCAGCTCCTGCTTCTGGGACAACACTACCGATGGTATGTAGAGAGTAGGAGGCCTGAGCACAATACCAGTATtgctttttctgtttcagtCTGAAATAAGCAGCAGAACAGACTATCAATGAAGAACAAGAGGGAGGAATAAGTTTGTGTAAGCCAGGGGGTGTTTCCTAGGGGAAAGCAAGGGGTATGATGACAGTTAACAGGATCACACCACTAAACTgccatctgtttgtttgtgggtaaattaaagtaattgaaGCTACCCTTATGTGCAGGAATACAAttctaatataaaatataataaaaccagaAATCCAGCTTCTGAATCCTGGGTGGATTTATGTTGGTAGAtgttggtaaaaaataaaatataaaaatttcCTTTGTCTGTTCAGTTAAGTATTGCGGTGCCATTAAGAGCACATGGAGTCTGGGGATTCTGCAGAAGTGATTGCTTATACTACAATTATACCCAGTCTGAGCTAGAgtgttggttaaaaaaaaaaaaatctacacatTTTTTCTTCCAGGGAGCTGCACTGTGAGATGGGAGAATAAATCCATGTACTGCATTGTCAGTGTCTTTGGGCTTGCTATATAACCTTAAATATAAACCCACCAAATGCTGCCTGCAAATTCACGTCACAGCAACATCAgtatgtgtttgtctttgttgttcattatttatgttCATAATTCAGTGTGTTTGATTTCACTCAGGCATTTCTCATTCTACCAAAATGTAATTCACCATTTTGAAGGTGCTTAAACCTGCACCTCTCCGAGATTCACATTTTTTGTGGAAAGGATTGTCAGCTTTGTGATTGtcatttgaataaattattacatatttctaaatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5003 lncRNA upstream 204235 23521873 ~ 23531567 (+) False AMCG00003891
TU4956 lncRNA upstream 365806 23366191 ~ 23369996 (+) True G4089
TU4936 lncRNA upstream 373355 23362036 ~ 23362447 (+) True G4071
TU4928 lncRNA upstream 397564 23332601 ~ 23338238 (+) False AMCG00003884
TU5055 lncRNA downstream 26946 23767408 ~ 23767759 (+) True G4162
TU5056 lncRNA downstream 33278 23773740 ~ 23774052 (+) True G4163
TU5057 lncRNA downstream 34178 23774640 ~ 23774943 (+) True G4164
TU5058 lncRNA downstream 40318 23780780 ~ 23781088 (+) True G4165
TU5083 lncRNA downstream 106549 23847011 ~ 23858660 (+) False AMCG00003902
AMCG00003898 mRNA upstream 9658 23710029 ~ 23726144 (+) True AMCG00003898
AMCG00003891 mRNA upstream 201927 23521826 ~ 23533875 (+) True AMCG00003891
AMCG00003890 mRNA upstream 215215 23459840 ~ 23520587 (+) True AMCG00003890
AMCG00003894 mRNA upstream 288383 23445822 ~ 23447419 (+) True AMCG00003894
AMCG00003892 mRNA upstream 312629 23410335 ~ 23423173 (+) True AMCG00003892
AMCG00003902 mRNA downstream 98127 23838589 ~ 24042885 (+) True AMCG00003902
AMCG00003903 mRNA downstream 363757 24104219 ~ 24114576 (+) True AMCG00003903
AMCG00003910 mRNA downstream 377922 24118384 ~ 24129186 (+) True AMCG00003910
AMCG00003917 mRNA downstream 541454 24281916 ~ 24282443 (+) True AMCG00003917
AMCG00003911 mRNA downstream 570146 24310608 ~ 24319648 (+) True AMCG00003911
TU5028 other upstream 22668 23710238 ~ 23713134 (+) False AMCG00003898
TU4606 other upstream 1812015 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 1975172 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 2186269 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 4366536 19368193 ~ 19369266 (+) False AMCG00003828
TU5311 other downstream 942938 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 2053590 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 4321901 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 4322212 28062674 ~ 28067786 (+) False G4831
TU6431 other downstream 6530748 30271210 ~ 30271524 (+) True G5245

Expression Profile