RNA id: TU5174


Basic Information

Item Value
RNA id TU5174
length 1341
lncRNA type sense_over
GC content 0.32
exon number 1
gene id AMCG00003910
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 24118384 ~ 24129892 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATAGGTATTTgtacatatttcttttttaaagagaTCAAAATTAGGTCATGAGGCCATTGTGATGAACAAATGTTAGTTTTGTATTATCAGATTTGTCTTGGTTATTTAGATTCCCCCCTTAtcatgtattgtgttgtgtactTGATAGTTGCTGTTTCTGCCAAGGTAGTTAGTTGCaaaactaacttttttttaGTATGAAGAgttcttaaattgtattgttagAAAGAAGACTGTGAATCAAATCAGAATTCAGAAGCTCATTGTTAAACTGGATCTTAATCGAtgagcaacacaaacacaatttctCAAAGTCAGATGTGAGAATTAGTTCCAGAAAATGtctttgttgttgctgtaaCTAAAATGACAAACAGCCATCGAAGCAGAAACCTTGACAGAATCTCTAGGTACATGAATCCGATAACAAATTAAACCCAGAAACAAGAATGCAGATTATGCAGACCCTTTTTTTAGTAAATAATTCTCATGCCCTCTAGTGTAATATAGTCTAATtacaacatacatttcaatttgattCCTTTGAGTGTAGCGAGAAGTTTCACACTGGTTTTATGATTGGACATCTGGCTCTGAATTTTCTGAATCATCACAGTAATAAGATAAACAATTCTAAATACAGCAATTTTGTGATGTGCGGAGGGTGAAACTgagtgcattttttttaaaggtagaATTTAGTAGAAAATATTTGCTTCTCTTTGAAGATGCTTAATATCTTAACAGCGTAAATTAACTAAGTTTGTCtcctacataaaataaaatatatgaccAACATaattttgttcattcatttcaaatggGGATATGTTACTGACAATGCATgacctttttatattttcttgatttagcTAAGGAGTGAAAAGGTATCATTAAGTGTTTTTTAGTACAGAGAAAGTATagtttaaatgttatgtttctTACAAATACTGTCAGACTGTcagtataaatatttggatGTCTACCAGCAGAGAGGGAGATCTTATCCTCTTGCAAAATTAGTACTGTTTGTTACACTCAAAGTTAGTTATGAAGCACCTCtgctttttaacacatttatgtatCCAGTGTCTGTAAATCTATtggtgttttattatattgGTGACTGCAGATGCAAGAAGACCCTTCAGCACATAAATCCAAAGCAAAATGAAACTATTACTGTGACCTGTCTTCTCAGGAATTTAAGCGGTCTCTTCCTAAATGTCTCTTGATATGTGACTTGATCCAACTATGAATTTTCACggttaaaaagtaaataaacgttttatgtaaaaaaaaatatatatatattgaagaaTGTATgactgttcttgtttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5083 lncRNA upstream 269892 23847011 ~ 23858660 (+) False AMCG00003902
TU5058 lncRNA upstream 347464 23780780 ~ 23781088 (+) True G4165
TU5057 lncRNA upstream 353609 23774640 ~ 23774943 (+) True G4164
TU5056 lncRNA upstream 354500 23773740 ~ 23774052 (+) True G4163
TU5055 lncRNA upstream 360793 23767408 ~ 23767759 (+) True G4162
TU5302 lncRNA downstream 480382 24610274 ~ 24610562 (+) True G4351
TU5305 lncRNA downstream 517617 24647509 ~ 24647755 (+) True G4354
TU5309 lncRNA downstream 528015 24657907 ~ 24662781 (+) True G4358
TU5310 lncRNA downstream 534047 24663939 ~ 24664183 (+) True G4359
TU5313 lncRNA downstream 555124 24685016 ~ 24687137 (+) True G4362
AMCG00003903 mRNA upstream 13976 24104219 ~ 24114576 (+) True AMCG00003903
AMCG00003902 mRNA upstream 85667 23838589 ~ 24042885 (+) True AMCG00003902
AMCG00003897 mRNA upstream 388090 23735802 ~ 23740462 (+) True AMCG00003897
AMCG00003898 mRNA upstream 402408 23710029 ~ 23726144 (+) True AMCG00003898
AMCG00003891 mRNA upstream 594677 23521826 ~ 23533875 (+) True AMCG00003891
AMCG00003917 mRNA downstream 152024 24281916 ~ 24282443 (+) True AMCG00003917
AMCG00003911 mRNA downstream 180716 24310608 ~ 24319648 (+) True AMCG00003911
AMCG00003913 mRNA downstream 236307 24366199 ~ 24423841 (+) True AMCG00003913
AMCG00003914 mRNA downstream 335159 24465051 ~ 24498556 (+) True AMCG00003914
AMCG00003912 mRNA downstream 372098 24501990 ~ 24540373 (+) True AMCG00003912
TU5028 other upstream 415418 23710238 ~ 23713134 (+) False AMCG00003898
TU4606 other upstream 2204765 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 2367922 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 2579019 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 4759286 19368193 ~ 19369266 (+) False AMCG00003828
TU5311 other downstream 553508 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 1664160 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 3932471 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 3932782 28062674 ~ 28067786 (+) False G4831
TU6431 other downstream 6141318 30271210 ~ 30271524 (+) True G5245

Expression Profile