RNA id: AMCG00003911


Basic Information

Item Value
RNA id AMCG00003911
length 1700
RNA type mRNA
GC content 0.54
exon number 2
gene id AMCG00003911
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 24310608 ~ 24319648 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAATGATGAGAGATCGACTGGAAGATCTACAGGAGGTGGTGTCAACTGAACTCCCAACACTGAACCAGAGCAGTGGCAATGTAGATGAAGGGGACTTGAGTCAGGAGGCTGCGCTGTTTGACACAGACCGAGCTCTGCAAAGTGTGTTTAAGGAGGCTCAGGATGTGCGAAACGAGATCCAGCTCATCAGGCAGGACATCAAGCGTCTGAAGGAGCAGAACGCCCGCATTCTCACCGATGTGTCGCGGATGACCTACATCAAGCGAGACTCCAATGCCATCGCCGCTGACATCAAGACCCGGGGAGAAGGAGTCCTGCACCGGCTCCAGAAGATGGAAGAGCAATGCAAGGAGCTGGAGGTCAAATACGGTGTAACCTCGACCGTGGTGCGTATCGCAAGGACCCAGTATGTTTCCCTGAGCAACAGCTTTCGTGACGCCATGTTCGAATACAACGATACGGAGATGACCCTCCGAGAGAACTGCAAGGCTCACATCCAGAGGCAGATGGAGATTGTCGGCAAGGAGGTCACCGGCGAAGAGATCGAGGAAATGCTTGAAAACAATAAGTGGAATGTGTTCACTGAGAACGTGCTGGTGGAGGGCAAGACAGCCCGCTCCGCCTTAAATGAGATCGAGTGCCGCCACCAGGAGCTGGTGGATCTGGAGAACCGCATCAAGAGTGTCCATGAGCTTTTCCTAGATGTGGCCATGATTGCGGAGGACCAGGGCCCCATGATGAACACCATTGAAGCCAACATCCACAAAACTGACATGTCTCTGGGGCAGGTGCTGACGAAGCTCAAcgctgccaagaaatacaataGGACGATGAAAGACCGACTCGGTGATCTGCAGGTGGTGACCCAGGACTCATCCCACGAGGAGAGGGAGGATGACCCTTCGGCTGTGGAAGATGTAGAGATGGAGCAGCAGGCCGTGGTGTTTCAAGATGAACACACCATGGATGACGTCTTTAAAGAGGCGCAGGCGATTCGGCAAGAGATCAGTCACCTTAAGGTGGATGTCAAACGCCTGGGCAAGCAGAACACGCGTTTCCTCACGTCTGTGCGGCGGATCAGCAGTATCAAGCGCGACTCCAATGCCATCGCCCGGGACATCAAGGCCAGGGGAGAAGGCATCTACAAGCGGCTGCAGAAGATGCAGACCCTCAGCAAGGACCTAGAGACCGAGCACGGCCTCAACGCCGCCTTGGTGCGCATGGTGCGGTCCCAGTACATCTCTCTCACGAACAGCTTTCAGGACGCCATGTTTGAGTACAATGAGGCTGAGATGACCCAGCGGGAGAATTGCAAGACCCGCATCCagagacaggtagagatcaTGGGCAAGGAGGTCACTGGGGATCAGATTGAGGAGATGATCGAGACCGGCAAGTGGAATGTGTTTTCTGAGAATCTGATGACCGAAGGGAAAACGTCCCGCTCGGCGCTCAACGAAATAGAGAACCGCCACAAGGAACTGCTGGATTTGGAGAGCCGAATCCGTGAGATCCACAACCTGTTTTTGCAGATGGCCCTGCTGGTGGAGGAGCAGGGCTGCATGCTGGACAACATCGAAGCCAATGTGAGCTTGACTCAGGAATATGTAGGGAAGGCTACATATCAGATTAAACAAGCCgtgaaatacaagaaaaagaaCCCCTGCAAACAGCTCTTCTGTGGCTGTTTCCCCTGCTGC

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K08487 STX11; syntaxin 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5174 lncRNA upstream 180716 24128552 ~ 24129892 (+) False AMCG00003910
TU5083 lncRNA upstream 451948 23847011 ~ 23858660 (+) False AMCG00003902
TU5058 lncRNA upstream 529520 23780780 ~ 23781088 (+) True G4165
TU5057 lncRNA upstream 535665 23774640 ~ 23774943 (+) True G4164
TU5056 lncRNA upstream 536556 23773740 ~ 23774052 (+) True G4163
TU5302 lncRNA downstream 290626 24610274 ~ 24610562 (+) True G4351
TU5305 lncRNA downstream 327861 24647509 ~ 24647755 (+) True G4354
TU5309 lncRNA downstream 338259 24657907 ~ 24662781 (+) True G4358
TU5310 lncRNA downstream 344291 24663939 ~ 24664183 (+) True G4359
TU5313 lncRNA downstream 365368 24685016 ~ 24687137 (+) True G4362
AMCG00003917 mRNA upstream 28165 24281916 ~ 24282443 (+) True AMCG00003917
AMCG00003910 mRNA upstream 181422 24118384 ~ 24129186 (+) True AMCG00003910
AMCG00003903 mRNA upstream 196032 24104219 ~ 24114576 (+) True AMCG00003903
AMCG00003902 mRNA upstream 267723 23838589 ~ 24042885 (+) True AMCG00003902
AMCG00003897 mRNA upstream 570146 23735802 ~ 23740462 (+) True AMCG00003897
AMCG00003913 mRNA downstream 46551 24366199 ~ 24423841 (+) True AMCG00003913
AMCG00003914 mRNA downstream 145403 24465051 ~ 24498556 (+) True AMCG00003914
AMCG00003912 mRNA downstream 182342 24501990 ~ 24540373 (+) True AMCG00003912
AMCG00003915 mRNA downstream 232492 24552140 ~ 24554116 (+) True AMCG00003915
AMCG00003918 mRNA downstream 449309 24768957 ~ 24776655 (+) True AMCG00003918
TU5028 other upstream 597474 23710238 ~ 23713134 (+) False AMCG00003898
TU4606 other upstream 2386821 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 2549978 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 2761075 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 4941342 19368193 ~ 19369266 (+) False AMCG00003828
TU5311 other downstream 363752 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 1474404 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 3742715 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 3743026 28062674 ~ 28067786 (+) False G4831
TU6431 other downstream 5951562 30271210 ~ 30271524 (+) True G5245

Expression Profile