RNA id: AMCG00003912


Basic Information

Item Value
RNA id AMCG00003912
length 1728
RNA type mRNA
GC content 0.54
exon number 13
gene id AMCG00003912
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 24501990 ~ 24540373 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGACATTTACTGCATGGCAACTTGTCACTGCTTAGCACTACATTAACTCAGGAGCTAACAGTCCTCCCTGCTCTGGTCTCGTGTCTCTGGCAGGCTCTGCGGAGTGAGCTGAAGGAGAAGGCGCAGGTCGTGGTGAATACGCTGGACCAGGCCAGGATGTTCTTAGCTGACCAGCCCATCGAGGGTCCCGAGGAGCCCCGGAGAAACCTGGAGCCCAAAACAGAGCTCACCCCTGAGGAGAAGGCCCAGCGAGTGGCCAAGGCCATCCGCAAACAGTCCGTGGAGGTGCAGGAGAAATGGGAGAGGCTCAATGCTCATGCGGGCGGCTGGCAGCAGCAGGTGGACAAGGCGCTGGAGAAGCTGCAGGACCTGCAAGGTGCCATGGACCAGCTGGATGAGCACCTGGCCCAGGCCGAGAGCACCAAGGCAGACTGGCAGCCAGCATTCAGGGAGGAAATTGTGCCAATGAAACCAGAAGTCCGGCTGGTGAATGACCTTTCCAGTCAGCTGTCACCCCTTGATGTTCATCTGTCTTCAGGCGCCTCCCGACAGCTGGATGATTTAAACATGCGCTGGAAGCTTTTACAGGTGGCTGTGGAGGATCGCCTGAAGCAGCTGCAGGAGGCACATCGGGACTTCGGGCCCTCGTCCCAGCATTTCCTCTCGActtCAGTGCAGCTTCCATGGCAGAGAGCTGTATCCCATAACAAGGTTCCTTACTACAtcaaCCATCAGACCCAGACGACCTGCTGGGATCACCCGAAGATGACAGAGCTGTTCCAGTCTATGGCTGATTTGAACAATGTGCGCTTTTCTGCCTACCGAACAGCAATGAAGATCCGCAGGCTACAGAAAGCACTCTGCTTGGATTTATTGGAACTGAACGTGGCCCAGAATATTTTTGAACAGCACAAACTCACCCAGAACGACCAACTCCTCAACGTCCCTGATGTCATCAACTGCTTGACAACAATCTACGATGGGCTGGAGCAGGAACACAAGGACCTTGTCAATGTGCCACTGTGTGTCGACATGTGTTTAAACTGGCTTCTCAATGTGTATGATACTGGTCGGAGTGGGAAAATCAGGGTGCTGTCCATGAAGATTGGACTGCTCTCTCTTTCCAAGGggcatttggaagaaaaatataaatATCTCTTCAGACAAGTGGCCGCCCCTTCAGAGACATGTGACCAGAGACAGCTGGGCCTGCTCCTGCATGATGCTATCCAGATCCCCCGGCAGCTGGGCGAGGTGGCCGCCTTTGGGGGCAGCAACATCGAGCCCAGCGTCCGAAGCTGCTTCCAGCACGTCAATAATAAGGCCGAGATCGAGCCCAAGCAATTTGTGGACTGGATGCATCTGGAGCCTCAGTCCATGGTGTGGCTGCCCGTCCTGCATCGTGTGGCTGCTGCAGAGACGGCAAAACACCAGGCAAAGTGTAACATCTGTAAAGAGTGTCCTATCGTCGGCTTCAGGTACCGCAGCCTGAAACACTTCAACTATGATGTCTGCCAGAGTTGTTTCTTTTCTGGACGCACAGCCAAGGGCCATAAATTAAACTACCCCATGGTCGAATACTGCACCCCCACGACCTCCGGGGAAGATGTACGAGATTTTACAAAggtgttgaaaaacaaattcagatCGAAGAAGTACTTCGCCAAACATCCTCGGCTTGGATACCTCCCCGTCCAGACTGTCCTGGAGGGAGATAACTTGGAGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5174 lncRNA upstream 372098 24128552 ~ 24129892 (+) False AMCG00003910
TU5083 lncRNA upstream 643330 23847011 ~ 23858660 (+) False AMCG00003902
TU5058 lncRNA upstream 720902 23780780 ~ 23781088 (+) True G4165
TU5057 lncRNA upstream 727047 23774640 ~ 23774943 (+) True G4164
TU5056 lncRNA upstream 727938 23773740 ~ 23774052 (+) True G4163
TU5302 lncRNA downstream 69901 24610274 ~ 24610562 (+) True G4351
TU5305 lncRNA downstream 107136 24647509 ~ 24647755 (+) True G4354
TU5309 lncRNA downstream 117534 24657907 ~ 24662781 (+) True G4358
TU5310 lncRNA downstream 123566 24663939 ~ 24664183 (+) True G4359
TU5313 lncRNA downstream 144643 24685016 ~ 24687137 (+) True G4362
AMCG00003914 mRNA upstream 3434 24465051 ~ 24498556 (+) True AMCG00003914
AMCG00003913 mRNA upstream 78149 24366199 ~ 24423841 (+) True AMCG00003913
AMCG00003911 mRNA upstream 182342 24310608 ~ 24319648 (+) True AMCG00003911
AMCG00003917 mRNA upstream 219547 24281916 ~ 24282443 (+) True AMCG00003917
AMCG00003910 mRNA upstream 372804 24118384 ~ 24129186 (+) True AMCG00003910
AMCG00003915 mRNA downstream 11767 24552140 ~ 24554116 (+) True AMCG00003915
AMCG00003918 mRNA downstream 228584 24768957 ~ 24776655 (+) True AMCG00003918
AMCG00003922 mRNA downstream 242421 24782794 ~ 24825995 (+) True AMCG00003922
AMCG00003925 mRNA downstream 289056 24829429 ~ 24829785 (+) True AMCG00003925
AMCG00003926 mRNA downstream 312287 24852660 ~ 24868862 (+) True AMCG00003926
TU5028 other upstream 788856 23710238 ~ 23713134 (+) False AMCG00003898
TU4606 other upstream 2578203 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 2741360 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 2952457 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 5132724 19368193 ~ 19369266 (+) False AMCG00003828
TU5311 other downstream 143027 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 1253679 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 3521990 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 3522301 28062674 ~ 28067786 (+) False G4831
TU6431 other downstream 5730837 30271210 ~ 30271524 (+) True G5245

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00042540 False 1593 mRNA 0.56 14 NC_007134.7 1349277 ~ 1443781 (+)