RNA id: AMCG00003913


Basic Information

Item Value
RNA id AMCG00003913
length 7883
RNA type mRNA
GC content 0.54
exon number 53
gene id AMCG00003913
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 24366199 ~ 24423841 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aTGAACACGATGCTGTACAGAAGAAAACCTTTACTAAATGGATCAATGCTCGCTTCTCCAAGGTACAGATGTGCAATGTCTCTAAAGTACAATTAGGATTTATCTTATCTGAGGTTTTTAGCCTTCGGAGTGGAAAGGCTCCGATCAAGGACATGTTTGCAGACCTCAGGGATGGCAGAAAGCTGCTGGACCTCCTGGAAGGCCTTACAGGAAGTGCTTTGacCAAAGAACGGGGATCTACGCGAGTGCATGCCCTCAATAATGTTAACAGAGTCCTGCAAGTTCTACACCAGAATAATgtGGACTTGGTTAACATAGGAGGGACTGACATTGTGGATGGAAATCGTAAACTCACCTTGGGCCTCATCTGGAGCATCATTTTGCACTGGCAGGTGAAAGACATCATGAAGGATATTATGTCCAACCTACAGCAGACAAACAGCGAGAAGATCCTGTTAGGCTGGGTGCGCCAAAGCACACAGTCCTACAGACAGGTCAATGTGCTCAACTTCACCACCAGCTGGGCTGACGGCCTTGCCTTCAACGCCATCCTGCACAGGTTCAAGCCTGGTCTGTTCAGCTGGGATAAAGTATTGAGTATGACTCCTGTGGAGAGACTGGACCATGCGTTCAGCATCGCCAAAGAACAGCTGGGCATCGAGAGACTCCTGGACCCTGAAGATGTGGCCGTGCAGCTGCCTGATAAAAAGTCCATCATCATGTACGTGACGTCTCTGTTTGCAGTCCTTCCTAAAGAAGTCACCATGGACGACATCCGGGAAGTGGAGACCCTGCCCAGGAGGTACAAAGCAGCATGTGAAGAGGGACCGGCGTATACCCAACAGAGTCCGGCCTCTGAAGAGGAAACGGGCAGCTCCCGAGCAGAGACCCCGAGTACAGTGACCGAGATGGAGGTGGATCTTGACAGCTACCAGGCCACGCTGGAGGAGGTCCTGACCTGGCTGCTCTCTGCAGAGGACACCCTCCAGATGCAGGATGACATCTCAGATGATGTGGAAGAAGTGAAGGACCAGTTCCACACCCATGAGGCCTTCATGATGGAGCTGACCGCACACCAGAGCAGCGTGGGCAACGTGCTGCAGGCAGGCAACCAGCTCATCGCCCAGGGCAGCCTGActgacgaggaggaggaggagatccGCGAGCAGATGACCCTGCTCAACTCGCGCTGGGAGAGCCTCCGCGTGGCCAGCATGGACCGGCAAGCCAGGCTGCATGAGGTTTTGATGGATCTGCAACAGCAGCAACTGCAGCAGCTTTCTGATTGGTTGACACAGACTGAAACGCGCATTCGCAAGATGGAATCCGAGCCACTGCCTGGAGATATGGAGGGCTATAAGGAACACATTGAGCAGCATAAAACACTACAGAATGACCTGGAATTGGAACAGGTGAAGGTGAACTCGTTGACCCACATGGTGGTGGTTGTGGATGAGAACAGCGGGGAGAGCGCCACCGCTGCCCTGGAAGTTCAATTGCAGACCCTGGGTGAACGTTGGGCAGCTGTATGCCGATGGACAGAAGAGAGGTGGCACAAACTGCAGGACATCCTATTCATGTGGCAGAAGTTAGTAGAGGACCAGtGCTTATTCAAGGCTTGGCTCACAGAGAAAGAAGAAGCTTTGAGTAATGTTCAGACCAGCAGCTTCAAGGACCCAAGtgaaattaatgttaatgttcGAAGATTAGCTATCTTGAAGGAGGACATGGAGATGAAGAGACGGGCGCTAGACCAGCTGACTGACGCCGGGCAGGATGTCGTCCAGCTGCTCGCAAGTCAAGAGGCGGCATGCAACATCGACGGGGATGCCGAGGAGCTGACGCAGCGATGGGACAACCTCGTTCAGAAACTGGAAGACTGCTCCAATCAGgTGACTGAGTCAGTAACTAAATTAGGGCTGCCCCAGGTTCAGGAGAAAGTTGGCACGGATATGACAGACAAGGGGTCAGTGAAGTCGGCCGAGCAGGagctccccccccctccccctcccaagAAACGCCAGATGCACGTGGATGTTGAAGTGAAGAAGCTgatTGATGGTGAATGTGCTGAATTGCTGAACTGGATTGGAAAATGGAAAGCTTCCATTCAGGCCCTCGGTATCAAAGACTACAAAAAGATGAAGGAGATGTCTGACATTAAGGAAAAGATAAAGTCTCTGGAAGGTCAGCTGTCAGAAAAGCACACACAGGTGCATGAGGTGTCTCAGTCTGGGCAGAATCTGCTGGAACAAATGGAGAAAGAAGGCCTGCCGATGGAGGAAGTGAGATGCAGCCTGGAGAAGGTTTCATCAGAGTGGAAGGACAGCAGAAGACAAGTGGAGGAGCTGAAAGAAAAGGTGCAACGGCAAGAAAAGATCTCTGCCTTTTATAGCAAGCTGCAGGTGGTGGAACAGGCGATGATAGGCGCGGAGCGATGGCTGAGGACTGTgcctgctggagctgctgaTGAGAAGTCCCTGCAAACTCTGAAAACAGCCTGCAAGGCTGAGCTGGCCCAGCTGACGGGACTGAAGCCTCAGATTGAACGCTTGTCCAGCACTGCGTCCGCCCTGGGGGCTGAGCCGGTGTCTCCAGGCTTTCTCCAGCAGGACAAATTATCAAACCAGCTCGTTGAGACCGAGGCGAAGCTTGGCGCAATCCGCAGCAACATTGTGGATGTGAAGACGGCAGAGGAAGTGCTGAGGAATGCAGAGACATTGTGTGAAGATCTGGAGCAGCAGGGGCACACGCTGGAGCAGCAGGCCCCGGCTGGGCttggtgcagagagagaggcccTCCGGCAGCGCTGGACTGGGCTGAGCTCCAGAGCTGGTAGCGAGCTGCAAGCGCTGCAGGGACTTGTGAAGAGCCTCCGGGAGTTTGAGGTGAAGGCGGGGCAGGTTGAGAAGTGGATGGAAGGAGCAGAGGCCTACATGACCAGAAACGCTGTCGCACACGGAGATGCAGAGAAGCTCCAGGAAGAATTAAACCAGTGCATGgcaTTTGTTAATGAAATGGACAATGTGGAAATGGCTTTGAAAAACTTGAATGatgaagcagcagcagtaaaagcGCACGCAGTACCTGGTCTAGCCAGCTGGGAGCAGCCTAGGCTGGAGCAGTGTCAACGTGGATGGGAGAAACTCAGCAAACAGATGTTAAGCCACCAGGAGCGAGTGTCGGAGAGTCAGGAGAAGGCAGTGAATTTGAGGAAAGACTTGGCAGAGATGCAGGAATGGATGATGCAAGTAGACGAAGAGTATTTGATGAGGGACTTTGAGTACAAAAGTCCAGAGGAGCTTGAGGGAGCTTTGGAAGAGATGAAGAGAGCGAAAGAGGATGTGTTGCAGAAAGAAGTGCGAGTGAAGATACTGAAGGATAACATTAACATGCTGGTGGCAAAGTCACCCTCTGGTGGCCATGATTTGACATCGGACCTCAGTGGTCTGCTGAAGAACTACCAGAAACTGTGCGAGAGATTTCGGAGCAAGTGCCACACTTTGGAGGAAGTCTGGTCCTGTTGGATTGAGCTTTTACAGTATTTGGAAATTGAGACAAACTGGCTGAACACACTGGAGGAGCGTGTGCAGAACGTAGAGAACCTGCCTGAGAACACAGAGGCCATCGGCGAGGCCCTGGAGTCTCTGGAGTCTGTTCTGCGCCACCCTGGGGATAACCGAACGCAGATCCGGGAGCTGGGCCAGACGCTTATTGACGGAGGAATTCTGGATGAGATCATCAGTGAGAAGCTGGAGGCTTTCAACGCTCGCTATGAGGAGCTGAGCCACCAGGCTGTGAGCAGACAGATCTCCctggagcagcagctgcagtATCTGCGGGAGAACGAGCAGATCCTGCAGGCCCTCCAGGACTCCCTGACCCAGCTGGACCAGCAGCTCACCTCCTACCTGACTGACCGGGTCGACGCCCTCCAGCTCCCCCAGGAGGCACAGAGCATTCAAGCAGAGATCGCAGCTCACGAAGCCAACATGGAGGAGCTGAGAAGGAGAAACGTGGGGAACTTCCCTCCAGTCACCACAGAGGGGAAGTCTCCACGCGGAGGGACCATGCTGGATGTGTTACAGAGGAAGCTCCGGGAGATCTCCACTAAATACCAGCTCTTCCAGAAGCCTGCGAACTTTGAGCAGCGCATGCTGGACTGTAAGCGTGTCCTGGAAGGAGCCAAGGCCGAACTGTCCGTACTTGACGTCAGAGGGGTGGAGCCAGAGGAGATACAGAAACACCTGGATGGCTGCATGAAACTGTATAAGATCCTGAGTGAGGTGAAGCTGGAGGTGGAGACCGTGATCAAGACAGGGAGGCAGATTGTGCAGAAGCAGCAGACTGATAACCCGAAGGGAATGGATGAGCAGCTCACAGCGCTCAAGACCCTCTACAATGACCTGGGGGCTCAGGTGACTGAAGGCAAGCAGGACCTGGAGAAAGCTCTCCATCTCGCTCAGAAACTGCGCAAGGAGAGCACAGCGCTGCAGGAGTGGCTCGCAGCGACTGAGAACGTCCTCAACCAGAAGAACTCTTCCGGGGACATGCCTGCCGACATCGATGCTGAGATTGCATGGGCAAATGGTGtgctgaaggagctggagcGGCGCAAGACTGAGCTGAACAGCGTGACGGAGAGCAGCGCCTCCCTGCAGGGCCTGGTGGAGGCCAGCGAGGCCGTGCTGGAGGAGAGGCTGTGCGTCCTCAGTGCAGGCTGGGGGAGAGTGCGCACCTGGACTGAGGACCGGCTCAGCGCCGTGCTGAACCACCAGAACGAAGTGGAAATCTTTGACGAGAATCTGGCGCACATCAGCACCTGGCTGTACCAAACTGAAATTCACCTGGACGAGACCGAAAAACTGCCAGCAAATGATAAGGAGGAAGTCATCAAGAACCTCCTTCCTGAACTGGACGACATCAGCCTGCGAGTGGACAGTGTCCGGGACCAGGCCATCATCTTGATGACTAGCCGAGGGCCTGCTTGCCGAGAGGTTGTGGAACCCAAGCTGGCTGAACTGAATCGCAACTTTGAGAAGGTTTCCCAGCACATCAAAGCAGCAAAGTTGTCTGTGAGCACGGAGCCTCTGGGCCATGAGACGTGTGGACAGCAGGAGGCACAGGCTTTGAAGACATCTCCCCCTGCTGACCAGCCCCTGTTTGAGGCCGAGCTGCAGGACAGCCTCAGCGCTCTAAACAGGCAGCTGGCATCCCCTGAGTCGCAGCCCCAAGACGACGAAAAGCTGGATGAAGAAAAGGCCCAGATTGAGGAGCTGCTTCAGAGAGGCGAGCGGGTCCTTCAGCAAACCTCAGATGACGGCAAGAGAGAGGAGTTACGCAAGAAACTGCTCCTCCTACAGACTAAGTACACAACACTGAGGGAGTTGAAAATCCAGAGGAGTAAGCTGAGTCCTGCCGGGCGCCCTGTCCTCTCCGAGTTCAAGAGGGAAAAGGCTTCTCTGATGAGCTGGATGGACGAGACGGAGAATCGGCTCTCTGGGCTGCATGGACTGGAGGATGACCAGACACTACAGgagctgctgcaggaacTGGAGTTGAGAAAAGAAGAATTTAGTGCCCTTCAGAAGAAGAGTCGGGATTTCTCTCAGTATGAAACCGTGCAGGTGGATCACACACATTTCGACAGACGTTGGCAGGAGATCGAAAGCCAGTTTATTATCTATCAGCAAGCGCACTTCAAAAGCACACAGGAGCAACCTCAGAGTGCTATGCAGGATGCTGGGCCGTCCCTCCTACCGTCAGACTATCTACTGGAGATCAACAAGGTCCTGCTGACAATGGCAGATGTTGAGCTGCTGCTGAACTCTCCAGAGCTCAGCAGCGGACTGTACGAGGACTTCTCCAGCCAGGAGGACGCTCTAAAGAATGTAAAGGACAGTCTTGAGAGACTTGGGGAACAAGTCGCTGTTATTCACGAGAAGCAACCGGATGCCATCCAGGAGGCGTCCGGGGCAGAGGTGGTGCAGATAGGGGACGAGCTTACCCAGCTGAATGCAGAATGGGACCGAGTCAACCGGATGTACAGCGATCGTAAGGGGTGCTTTGACAGGTGTGTGGAAGAGTGGCGCCAGTTTCACTGTGACCTCAATGACCTCAGCCAGTGGGTGAGCGAGGCTGAACAGGTGTTGGCAGATGGCACAGGCCCTGATGGAGCTCTGGACTTGGAGAAGGCCAAGATGCATCAGCAGGAACTGGAGGAAGGCCTGACCAGCCACCAGCCCATCTACTCCACTCTGAACCAGATGGGCGAGGGCATCATCAGACAGCTGTCAGTCCcagacagcagcctcctgcAGGAAAAACTGGATGGTCTGAACAACCGCTGGAAGAACATCTACAGAGAGACCGGGGAGAGGCAGCACAGGACAGACGAGCTGGCCCTCTGGTTGGAACAGACCGAGTGCACTTTAGAGACTTTACCAGTCACTGCTACCGACAAGAACCTGAAGGAGCTCAAGGCAAGGGACCGTGATGCTTTGGCAGAAGAAATGGATGCGGAAAATGAAAAGCTAGCCTGGCTCAATAAGAATGGAAATCGGATACTCTCCAGCAAAAATCTCAGCCTGCATGAACGAGACCGACATGTGACCAGGCTGAGAGCTCTCAACATGAACTGGAGCAAAGTGACTAGTGAGCTGCTGGACAAAGTTGGTGAAGTGGAGGTGAACTTGCAGGGTCACAGCCAGTTCCAGGACAAAATGAGCCGACTGACGGACTGGGTTTTGGAGACCACAATGAAGGATCGCAAAAGAGAGCTGGAAGAGCTTCTTGCCAAATCCATTGAGCTTCAGAAGAGGCAGCAGCTACTACCACAGGAAAAGAGCAAAGTGGAGCAGTTGGCTGCTGATTGGAAGGCTCTCGACTTCACTGTGAAGGAGGTGGCTCAACGGCCTGTTGGCAGCTGGTCTCAGCAGGTCGCACAACAGAAAGTCACTGTGCCGTCCGCTGTCCAGATGGCCAGTCTGATGACTTCAGACCCGACCCACCTCACACCACGCAGCCCTGAGTTGGTAGCGCCTAAGGACCTGAACGAGACGGCCACCGAACTCGCTGACTGGCTTGTTCTCATCGACCAGATGCTGAAGTCAAACATTGTAACGGTCGGAGATGTGGAGGAGATCAGAACCACCATTGGCCGCCTCAAGGTGACAAAGACTGATCTGGAGCAGAGACACCCTCAGCTCGAGGATATCTTCACTCTTGCTCAGAACATAAAGAATAAGACATCCAATCTGGATGTGCGAACAGCCATCACCGAGAAATTGGAGAGGGTGCGCAGCCAGTGGGACAGCACTCAGCACGGCGTGGAGGCCCggctgcagcagctggaggaAATGACCACTGATAGCAACCAATGGGAGGAGCAGAGGAGGGAAGTGAAGGCTCTGATTGGACAGAACGAAACTCGCTGGCACAACCTGCTGCAGCCCTCTGGGGAGCCCTTGATCAAACAGCTCAATGATAATAAGGTGTTTTTACAAGACTTGAAGAGAGATCAGATCACAGTGGCTGCTTTCAATGACCTGTCTGGCAAGTTGCTCCGCGATTATGCCTCTGATGACACCAGGAAGGTGAAGGAGatcacagacaaacacaacGCAGCTTGGAACTCCATCTATAAGAGAGCGAGTGACAGGGAGAGCTCTCTGGACTCGGAGCTGAAGTCCCTGCAGGGCTCTCTGAAGAAGCTGGAGGTCTTTCTCAAGTGGCAACAGGAGGCCGAGACCACGGCCAATGTGCTGGAGGATGCATCGCAGAGGGAGGAGCTCTCCCAGGACACCACCCGCATCAAGGAGCTCAGGGGTCAGCTGGAGGTAAGAGGCGCAACGCAAATATCTGTGGAAGCCCATTTGGCCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5174 lncRNA upstream 236307 24128552 ~ 24129892 (+) False AMCG00003910
TU5083 lncRNA upstream 507539 23847011 ~ 23858660 (+) False AMCG00003902
TU5058 lncRNA upstream 585111 23780780 ~ 23781088 (+) True G4165
TU5057 lncRNA upstream 591256 23774640 ~ 23774943 (+) True G4164
TU5056 lncRNA upstream 592147 23773740 ~ 23774052 (+) True G4163
TU5302 lncRNA downstream 186433 24610274 ~ 24610562 (+) True G4351
TU5305 lncRNA downstream 223668 24647509 ~ 24647755 (+) True G4354
TU5309 lncRNA downstream 234066 24657907 ~ 24662781 (+) True G4358
TU5310 lncRNA downstream 240098 24663939 ~ 24664183 (+) True G4359
TU5313 lncRNA downstream 261175 24685016 ~ 24687137 (+) True G4362
AMCG00003911 mRNA upstream 46551 24310608 ~ 24319648 (+) True AMCG00003911
AMCG00003917 mRNA upstream 83756 24281916 ~ 24282443 (+) True AMCG00003917
AMCG00003910 mRNA upstream 237013 24118384 ~ 24129186 (+) True AMCG00003910
AMCG00003903 mRNA upstream 251623 24104219 ~ 24114576 (+) True AMCG00003903
AMCG00003902 mRNA upstream 323314 23838589 ~ 24042885 (+) True AMCG00003902
AMCG00003914 mRNA downstream 41210 24465051 ~ 24498556 (+) True AMCG00003914
AMCG00003912 mRNA downstream 78149 24501990 ~ 24540373 (+) True AMCG00003912
AMCG00003915 mRNA downstream 128299 24552140 ~ 24554116 (+) True AMCG00003915
AMCG00003918 mRNA downstream 345116 24768957 ~ 24776655 (+) True AMCG00003918
AMCG00003922 mRNA downstream 358953 24782794 ~ 24825995 (+) True AMCG00003922
TU5028 other upstream 653065 23710238 ~ 23713134 (+) False AMCG00003898
TU4606 other upstream 2442412 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 2605569 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 2816666 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 4996933 19368193 ~ 19369266 (+) False AMCG00003828
TU5311 other downstream 259559 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 1370211 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 3638522 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 3638833 28062674 ~ 28067786 (+) False G4831
TU6431 other downstream 5847369 30271210 ~ 30271524 (+) True G5245

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00042535 False 7899 mRNA 0.55 50 NC_007134.7 1181248 ~ 1336965 (+)