RNA id: AMCG00003914



Basic Information


Item Value
RNA id AMCG00003914
length 414
RNA type mRNA
GC content 0.53
exon number 4
gene id AMCG00003914
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 24465051 ~ 24498556 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTTCTGTACTGATATTCAGGCTGAGATTGATGCTCACAATGACATCTTCAAGAGTATTGATGGCAACAGACAGAAGATGGTGAAGGCTCTGGGCAGCTCCGAGGAGGCCGTGTTTCTACAGCAGCGATTGGATGATATGAACCTGCGCTGGAGTGAGCTGAAGGCAAAGTCTGCCAACATCAGGGCACACCTAGAGGCCAGTGCAGAGAAATGGAGCAGACTGCTGGCCCTGCTGGAGGAGCTGTGGAGGTGGCTGAGTCTGAAGGATGAGGAGCTCACAAAACAGATGCCAATCGGAGGAGACGTCCCGGCGCTGCAACAGCAGCACAACCACTGCGCTTTAATGTTTGGAAATGGTTTGCTCTTAATGTGTCTGCggtcgggggtgggggtgaaaCAGCAGAGTGgatag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU5174 lncRNA upstream 335159 24128552 ~ 24129892 (+) False AMCG00003910
TU5083 lncRNA upstream 606391 23847011 ~ 23858660 (+) False AMCG00003902
TU5058 lncRNA upstream 683963 23780780 ~ 23781088 (+) True G4165
TU5057 lncRNA upstream 690108 23774640 ~ 23774943 (+) True G4164
TU5056 lncRNA upstream 690999 23773740 ~ 23774052 (+) True G4163
TU5302 lncRNA downstream 111718 24610274 ~ 24610562 (+) True G4351
TU5305 lncRNA downstream 148953 24647509 ~ 24647755 (+) True G4354
TU5309 lncRNA downstream 159351 24657907 ~ 24662781 (+) True G4358
TU5310 lncRNA downstream 165383 24663939 ~ 24664183 (+) True G4359
TU5313 lncRNA downstream 186460 24685016 ~ 24687137 (+) True G4362
AMCG00003913 mRNA upstream 41210 24366199 ~ 24423841 (+) True AMCG00003913
AMCG00003911 mRNA upstream 145403 24310608 ~ 24319648 (+) True AMCG00003911
AMCG00003917 mRNA upstream 182608 24281916 ~ 24282443 (+) True AMCG00003917
AMCG00003910 mRNA upstream 335865 24118384 ~ 24129186 (+) True AMCG00003910
AMCG00003903 mRNA upstream 350475 24104219 ~ 24114576 (+) True AMCG00003903
AMCG00003912 mRNA downstream 3434 24501990 ~ 24540373 (+) True AMCG00003912
AMCG00003915 mRNA downstream 53584 24552140 ~ 24554116 (+) True AMCG00003915
AMCG00003918 mRNA downstream 270401 24768957 ~ 24776655 (+) True AMCG00003918
AMCG00003922 mRNA downstream 284238 24782794 ~ 24825995 (+) True AMCG00003922
AMCG00003925 mRNA downstream 330873 24829429 ~ 24829785 (+) True AMCG00003925
TU5028 other upstream 751917 23710238 ~ 23713134 (+) False AMCG00003898
TU4606 other upstream 2541264 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 2704421 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 2915518 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 5095785 19368193 ~ 19369266 (+) False AMCG00003828
TU5311 other downstream 184844 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 1295496 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 3563807 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 3564118 28062674 ~ 28067786 (+) False G4831
TU6431 other downstream 5772654 30271210 ~ 30271524 (+) True G5245

Expression Profile