RNA id: AMCG00003915



Basic Information


Item Value
RNA id AMCG00003915
length 405
RNA type mRNA
GC content 0.66
exon number 2
gene id AMCG00003915
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 24552140 ~ 24554116 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GACGATGAGCACACTCTGATCCTGCAGTACTGCCAGACGCTGGGAGGGGAGTCCCCGCTCAGCCAGCCCCAGAGCCCAGCCCAGATCCTGCAGGCGGTGGAGAGGGAGGAGCGCGGGGAGCTGGAGCGCGTCATCAcccagctggaggaggagcagagGAACCTGCAGATTGAGTACGAGCACCTGAAGGAGCAGCACAGCCAGAGGAGCTTCTCCCCATCACCCTCCTCACCCCCGGACTCAGTGGCCCTCAGCCAGCCAGCAGGGCCCGAGGAGGCCGAGCTCCTGGCCGAGGCGAAGCTCCTTCGGCAGCACAAGGGCCGGCTGGAGGCCAGGATGCAGATACTGGAGGACCACAACAAGCAGCTGGAGTCGCAGCTCCACAGACTGAGGCAGCTGCTGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU5174 lncRNA upstream 422248 24128552 ~ 24129892 (+) False AMCG00003910
TU5083 lncRNA upstream 693480 23847011 ~ 23858660 (+) False AMCG00003902
TU5058 lncRNA upstream 771052 23780780 ~ 23781088 (+) True G4165
TU5057 lncRNA upstream 777197 23774640 ~ 23774943 (+) True G4164
TU5056 lncRNA upstream 778088 23773740 ~ 23774052 (+) True G4163
TU5302 lncRNA downstream 56158 24610274 ~ 24610562 (+) True G4351
TU5305 lncRNA downstream 93393 24647509 ~ 24647755 (+) True G4354
TU5309 lncRNA downstream 103791 24657907 ~ 24662781 (+) True G4358
TU5310 lncRNA downstream 109823 24663939 ~ 24664183 (+) True G4359
TU5313 lncRNA downstream 130900 24685016 ~ 24687137 (+) True G4362
AMCG00003912 mRNA upstream 11767 24501990 ~ 24540373 (+) True AMCG00003912
AMCG00003914 mRNA upstream 53584 24465051 ~ 24498556 (+) True AMCG00003914
AMCG00003913 mRNA upstream 128299 24366199 ~ 24423841 (+) True AMCG00003913
AMCG00003911 mRNA upstream 232492 24310608 ~ 24319648 (+) True AMCG00003911
AMCG00003917 mRNA upstream 269697 24281916 ~ 24282443 (+) True AMCG00003917
AMCG00003918 mRNA downstream 214841 24768957 ~ 24776655 (+) True AMCG00003918
AMCG00003922 mRNA downstream 228678 24782794 ~ 24825995 (+) True AMCG00003922
AMCG00003925 mRNA downstream 275313 24829429 ~ 24829785 (+) True AMCG00003925
AMCG00003926 mRNA downstream 298544 24852660 ~ 24868862 (+) True AMCG00003926
AMCG00003923 mRNA downstream 330080 24884196 ~ 24966367 (+) True AMCG00003923
TU5028 other upstream 839006 23710238 ~ 23713134 (+) False AMCG00003898
TU4606 other upstream 2628353 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 2791510 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 3002607 21549201 ~ 21549533 (+) True G3751
TU4227 other upstream 5182874 19368193 ~ 19369266 (+) False AMCG00003828
TU5311 other downstream 129284 24683400 ~ 24683920 (+) True G4360
TU5497 other downstream 1239936 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 3508247 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 3508558 28062674 ~ 28067786 (+) False G4831
TU6431 other downstream 5717094 30271210 ~ 30271524 (+) True G5245

Expression Profile