RNA id: AMCG00003922


Basic Information

Item Value
RNA id AMCG00003922
length 2757
RNA type mRNA
GC content 0.52
exon number 8
gene id AMCG00003922
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 24782794 ~ 24825995 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGCTAAAACAAAGAGACTCTCAGAGGAGAGCGTCTCTGAGACTCAAGAGGTTTGACTCCCAGCAGCAGAATCTTCTACTACCCCAACAGCACTCAGCTTATGctGTACAGAAGCGGCTTACAAAAAAACTTGTTCCTGACAACCTCCTACTGCACTTGTTCGGCACAGCCAGCCGTTATCTCAGCTGTTCCATCACCGGCACTGAGAAATCTTACTCAGCCACTCTGCAtgacgGCTGGGCGGACCGAGACGAGGTGATTGAGGGGTATGAGCAGGAGGCGGTGGGAGGCATCACAATGAAGCTGCAGTCGGAAGAGGTCACCTCCTTTGACAGTTATTTCCTGAAGCTGCAGCTTGATACCAACACTAGAAATCCATGGTTTGCTGAATTCTGGCAGTATCGCTTCCAGTGCCGAATCCCGGGGCACCCTCTTGAGAATCCAAACTACAAAAGAATTTGCACAGGCAACGAGAGCTTGGAAGAAAACTATGTGCAGGACAGTAAAATGGGATTTGTGATCAATGCCATTTATGCAATGGCTCATGGGCTGCACGACATGCACCGTAGCCTGTGCCCGGGACACGTGGGGCTGTGCGACGCCATGAACCCCATCGATGGAAGCAAACTGCTGGAGTTCCTGCTGAAAACCTCCTTCATTGGGGTGTCTGGAGAGGAGGTGTGGTTTGATGAGAATGGGGACACACCTGGCAGATATGACATCATGAACCTGCAGTATGCGGAACATGGCCGCTATGACTACATCAATGTAGGGTCCTGGCACGAAGGGATTTTACATATCGATGACTACAAGATTCAGATGAACCGCAGTGAGATGGTGCGCTCCGTGTGCAGCGAGCCATGCTCCAAGGGGCAGATAAAGGTAATCAGAAAAGGAGAAGTGAGTTGCTGCTGGATTTGCACACCCTGTAAGGACAATGAATATGTCCAGGATGAGTTTACCTGTAAAGCCTGTGACCTGGGGTGGTGGCCAGACTTGGAACTTGAAGTCTGTGAGCCCATTCCTGTGCGGTACCTTCAGTGGAACAACGCAGAGTCCATAGTGGCCGTGGTTTTCTCCTGCCTGGGGATCCTGGTCACCATGTTTGTGACCTTCATCTTCGTGCTGTACAGAGACACTCCAGTGGTCAAGTCCTCTAGCCGTGAGCTCTGCTACATCATCCTGGCTGGGATCTTCATGGGTTACATCTGCCCATTCACCCTCATTGCCAGGCCCACAGTGGCCTCCTGCTACCTTCAACGGCTCTTGGTGGGCCTGTCCTCCTCCATGTGCTACTCGGCTCTGGTGACCAAGACCAACAGGATTGCTCGCATCCTGGCAGGCAGCAAGAAGAAGATCTGCACCCGGAAGCCCAGGTTCATGAGTGCTTGGGCCCAAGTGGTCATCGCCTCCATCTTAATCAGTGTGCAACTCACCGTGGAGATCACCCTTATAATCCTCGAGCCCCCAGAGCCTGTCAAGTCCTATCCCAGCATCAAGGAGGTCTTCCTGATATGTAACACCAGTAACCTTGGGATGGTGGCTCCTCTTGGGTACAACGGGCTGCTCATTTTGAGCTGTACCTACTATGCCTTCAAGACCAGGAATGTCCCGGCAAACTTTAATGAGGCGAAATACATAGCCTTTACCATGTACACCACCTGCATCATATGGCTGGCATTTGTACCCATCTATTTTGGCAGCAACTACAAAATAATCACCACCTCGTTTTCCGTGAGCCTTAGCGTGACAGTGGCGCTAGGGTGCATGTTCACGCCCAAGATGTACATCATCATTGCCAAGCCGGAGAGGAATGTGCGCAGCGCGTTCACCACGTCGGATGTTGTGCGCATGCATGTAGGTGATGGGAAAGTGGCCTGCAGGAGCAATAGCTTGCTTAATATgttcagaagaaagaaaaaccctCCTGGAAATGCCAAtTCTAATGGAAAGTCTGTGTCATGGTCTGAACCAGGTGCAAGACAGCCACCGAAGGGGCAACACATGTGGCACAGATTGTCTGTCCATGTGAAGAGACAGGAGGCAGGGTCCAATCAGACGGCAGTCATCAAACCCCTAACTAAAACCTACCAGAACAAGAGCCTCAACTTCTCAGACCTGAGCACCAAAACTTTGTACAATGTGGCCGAGGAAGACGAGAGCGACCCAATCAGGTACACTCGGCCTGTTAGCCCTTCCATGATGGTACACCGGCGAATCCCTGGCATGGGACCAATGAAAGAGGGGGAAGACGCCCAAATGTATACACCAGAACACATGCAGAACAGCATCCTCCCCCAGCAGGTGATAATGGATCAGCTCCAAGAAGTGGTGGACAAGTTCACTTCCAGCATTCCCGACCTCAATTCCATGATCACCCTCCCAGGCCCCGGCAACGGAGTGAGGCCCATCTATCAGCCCCACTTGGTACAGCAGCAAGTCCTTCCTCTGCAGATGGACACCTTTGGTGAGGAACCCGTCTTCCCagtggaggaggtggagggcgAGCGCTTCAACCTCATCCATGGCTACATGTATGACAATGCCGAGATCCACGAGGAGGAGGAATTGGTTCAAACCAAACTGACCCTGGAGGACTCCCCAGCGTTGACGCCACCCTCCCCTTTCAGAGATTCGGTGGGCTCCGGCAGCTCCGTCCCCAGCTCGCCTGTCTCTGAATCTGTGCTGTGTACGCCGCCGAATGTGACATATGCATCTGTCATCCTAAGGGACTATAAGCAAAGCTCCTCTACG

Function

GO: NA

KEGG:

id description
K04603 GRM1; metabotropic glutamate receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5313 lncRNA upstream 95657 24685016 ~ 24687137 (+) True G4362
TU5310 lncRNA upstream 118611 24663939 ~ 24664183 (+) True G4359
TU5309 lncRNA upstream 120013 24657907 ~ 24662781 (+) True G4358
TU5305 lncRNA upstream 135039 24647509 ~ 24647755 (+) True G4354
TU5302 lncRNA upstream 172232 24610274 ~ 24610562 (+) True G4351
TU5432 lncRNA downstream 655603 25481598 ~ 25554089 (+) True G4452
TU5466 lncRNA downstream 784083 25610078 ~ 25610296 (+) True G4482
TU5503 lncRNA downstream 988296 25814291 ~ 25888313 (+) True G4512
TU5526 lncRNA downstream 1103472 25929467 ~ 25929680 (+) True G4526
TU5542 lncRNA downstream 1118148 25944143 ~ 25944352 (+) True G4536
AMCG00003918 mRNA upstream 6139 24768957 ~ 24776655 (+) True AMCG00003918
AMCG00003915 mRNA upstream 228678 24552140 ~ 24554116 (+) True AMCG00003915
AMCG00003912 mRNA upstream 242421 24501990 ~ 24540373 (+) True AMCG00003912
AMCG00003914 mRNA upstream 284238 24465051 ~ 24498556 (+) True AMCG00003914
AMCG00003913 mRNA upstream 358953 24366199 ~ 24423841 (+) True AMCG00003913
AMCG00003925 mRNA downstream 3434 24829429 ~ 24829785 (+) True AMCG00003925
AMCG00003926 mRNA downstream 26665 24852660 ~ 24868862 (+) True AMCG00003926
AMCG00003923 mRNA downstream 58201 24884196 ~ 24966367 (+) True AMCG00003923
AMCG00003924 mRNA downstream 266389 25092384 ~ 25137260 (+) True AMCG00003924
AMCG00003936 mRNA downstream 329712 25155707 ~ 25156225 (+) True AMCG00003936
TU5311 other upstream 98874 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 1069660 23710238 ~ 23713134 (+) False AMCG00003898
TU4606 other upstream 2859007 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 3022164 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 3233261 21549201 ~ 21549533 (+) True G3751
TU5497 other downstream 968057 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 3236368 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 3236679 28062674 ~ 28067786 (+) False G4831
TU6431 other downstream 5445215 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 6062000 30887995 ~ 30894827 (+) True AMCG00004056

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00023495 False 3502 mRNA 0.51 8 NC_007128.7 7380550 ~ 7436766 (-)
grasscarp (Ctenopharyngodon idella) CI01000310_02410127_02438722.mRNA True 5289 mRNA 0.50 14 CI01000310 2409947 ~ 2439037 (-)