RNA id: AMCG00003926


Basic Information

Item Value
RNA id AMCG00003926
length 411
RNA type mRNA
GC content 0.54
exon number 2
gene id AMCG00003926
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 24852660 ~ 24868862 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCAGGGTGTACTACAAGGAAGCAGTAGGAGCGTTCGTCGTCTTCGATGTGACCAGGGGCTCCACCTTCGAGGCCGTATCAAAGTGGAAGCATGACCTGGACAGCAAAGTGAAGCTGGCCAATGGGAGCCCCATCCCTGCGGTGCTGCTTGCCAACAAATGTGACCAGAAGCAGGACAGCACGAGCAATAACTCCTCCCTCATGGAAACCTTTTGCAAAGAGACTGGCTTCCTGGGCTGGTTTGAAACCTCTGCAAAGGACAATATAAACGTGGATGAAGCCGCCCGTTTCCTCGTGGAGAACATCCTCGCCAATGACCAGGGTCTGCCTTATGAGGAGAGCAATGGGGACAAAGTGAAACTGGATCAGGAGGCGGTGGCAGCAGAGAGCAAGTCCCAGTGCTGCTAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0060036 notochord cell vacuolation biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5313 lncRNA upstream 165523 24685016 ~ 24687137 (+) True G4362
TU5310 lncRNA upstream 188477 24663939 ~ 24664183 (+) True G4359
TU5309 lncRNA upstream 189879 24657907 ~ 24662781 (+) True G4358
TU5305 lncRNA upstream 204905 24647509 ~ 24647755 (+) True G4354
TU5302 lncRNA upstream 242098 24610274 ~ 24610562 (+) True G4351
TU5432 lncRNA downstream 612736 25481598 ~ 25554089 (+) True G4452
TU5466 lncRNA downstream 741216 25610078 ~ 25610296 (+) True G4482
TU5503 lncRNA downstream 945429 25814291 ~ 25888313 (+) True G4512
TU5526 lncRNA downstream 1060605 25929467 ~ 25929680 (+) True G4526
TU5542 lncRNA downstream 1075281 25944143 ~ 25944352 (+) True G4536
AMCG00003925 mRNA upstream 22875 24829429 ~ 24829785 (+) True AMCG00003925
AMCG00003922 mRNA upstream 26665 24782794 ~ 24825995 (+) True AMCG00003922
AMCG00003918 mRNA upstream 76005 24768957 ~ 24776655 (+) True AMCG00003918
AMCG00003915 mRNA upstream 298544 24552140 ~ 24554116 (+) True AMCG00003915
AMCG00003912 mRNA upstream 312287 24501990 ~ 24540373 (+) True AMCG00003912
AMCG00003923 mRNA downstream 15334 24884196 ~ 24966367 (+) True AMCG00003923
AMCG00003924 mRNA downstream 223522 25092384 ~ 25137260 (+) True AMCG00003924
AMCG00003936 mRNA downstream 286845 25155707 ~ 25156225 (+) True AMCG00003936
AMCG00003932 mRNA downstream 556955 25425817 ~ 25459951 (+) True AMCG00003932
AMCG00003935 mRNA downstream 650051 25518913 ~ 25548622 (+) True AMCG00003935
TU5311 other upstream 168740 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 1139526 23710238 ~ 23713134 (+) False AMCG00003898
TU4606 other upstream 2928873 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 3092030 21745850 ~ 21760630 (+) True G3771
TU4541 other upstream 3303127 21549201 ~ 21549533 (+) True G3751
TU5497 other downstream 925190 25794052 ~ 25795791 (+) False AMCG00003930
TU5898 other downstream 3193501 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 3193812 28062674 ~ 28067786 (+) False G4831
TU6431 other downstream 5402348 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 6019133 30887995 ~ 30894827 (+) True AMCG00004056

Expression Profile