RNA id: AMCG00003956


Basic Information

Item Value
RNA id AMCG00003956
length 2707
RNA type mRNA
GC content 0.42
exon number 5
gene id AMCG00003956
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 26319767 ~ 26328027 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGAGGCAGCACGCACGGGTTCTCGAGACAGCGCCGGTCACGTGATCAGCGCGGCAAACCAGGAAGTGAAGCCGCGCGGCGTGTGCACAGGACTGCGGGCGCCGGCATTTGGATGTTTTCACTTTATAACAATGTATAACCTGGCAGCTGTCGGATATGTGTTGGTGTTAACTCTCTTACAGGGGAGTCAGGCCAACACAGTAGGAATAAACGTCACCGTGTCTGGAGTACAGCAACGCAGCAGCGATATTTTAGCCAGCCTTGCTAATCTGGAGTCCAGTGCCGTGCGGACAGCGCAGTCTCCGGGGCCGGGGTCGTACGTCTCCCCCGGACTGCTCTCGGCTTTTCCTGAAGATATAGAGATCAGCGACCAGTGTCAGGAGCTCCTTCAGATCTTCTCCCAGCAGTGCAGCTCCTTCGTGGACTGCATCCTGACGTCGGCTCGGCCTGTCCGAGTCTGCCAGAACTGCTTCAGCAGATTCAACCGTGTGCAGGAAATCTTTACTAATATATCTTCAGAGACGAGCTTTGGGAACGTGAGCTGCAGAGACAGCCTGCTGCGCTCGGACAGGCTGCAGCTGGTGTTTGTGATGTACCAAAATCTGAAGCGAATCTGGGAAAGCTCCCTGTGTGAACGTGAGTACGACTTCAGACAGAGCAACCGCTCTGAGCTCTGCAAGGAATGCAAAACCCCCTACAAAAGCTTGAACAATCTGTACAACAGTATGGTGAAGAACTCCACACTCTGCATTGACATCGAAGACGCGATGAATATGACCCGCAGATTGTGGAGCAAGAATTTCAATTGTTCATTCCCCCGGGAAGAGACTGTCCCCATCATCGCCGTGTCCAGCTTCATGCTCTTTCTGCCCATCATCTTCTACTTGAGTAGCTTCCTTCACTCGGAACAAAAGAAGCGCAAGCTCATACTCCCCAAGCGTGCGAAATCCAGCAACAGTCTGATGAACATCCAAGACAAATGCAGCTGAATGTATACAAGACAGAGGTCACCAAAAGCCAAGCAAAGAAATGGGAGTGACCAGAGAACTGGCCATTGTGGAGGTGACTAGTATTAAATGCTGCTAACGAGGCTAAAATTATGTTAACAAGACTGGttggctttttcatttttctatatattttttggtttggcGTTTTGGCAGAGTTTGGTACATGTGTATGTTAAAATACCTTTCATTTGGATATATTGCCAAAACGTTAAAGTGTGATGCAGGTCATCACCAGCTTGATCTCTCAGTAACACTGTTTGCTGCACTGAAATAACCCGAGCTCTGCTTTTAAACCTTTGTTTTCCATGTGACTGTGCCCGATGTATAATAAAAGGACAGAATAAAGTAAGTCCATTCTAGGaacaattacataataataataataactcccATCAATAATCACTCCCATCAATAATCAATATTTGCTTTCCTGTCTTTGTCATTACCAATGTAAGTAACttaaatgatttgtatttgtgtattgtttatatCCCTGAAAGTGTACATTCGGTCATTTGCCAGTGTTTACAGTGGTGCACAATTGCACATTCACCTGAGTATTCTCACTGTGCCTGTAGGAAGATTACCCATCTTGAcagctgtaatttaattttgtttttattttaagctagtcctacattttgaaaagggTCATATAGAAGCAGGGAGGTTTGCTTCGAACAGAAAGTGTACAatgtttgtattgctgttaatggGAGTGTATATTGTCACATTTCTTGTAGGAATTATGTAATTTATCCTAATAGACTGTGGAAcattcacaatatttattttaaaacggGGTCAGGCGCATCactgggattttattttattgttgttaaattTGGCAGCCAATACTGAAAAGTGACTCGCACATCAGACAGTGGTGCTTGTCAGAGCAGTGTCATGtgcactttgcttttgattCAGTTCTTCTGGTTGAACAGTCTATCCTGGGTTCTGTGACTGTGACATTTCCTCCTGCAGAAATATTGGTCATGATGGCATTACCTTTCAAAAATAGCGTTTGAAGAGACTTATCCGAGCTGATAGCCAGGAATATGTACTTTCCTCCCACGATTTAACAGCAGGGCCATGTGCAGAGATCGTCACATTCAGCATAAAATGTGCCATTTCATTTCCACTCAGGGGTGTTAACCAATCCCTGTCCTACTCTCAATGCAACTGCTGTCAATAAAATTAGTTTCTTCCAGGTAAACTAAATGGGTAGTTtactaatgtttaaaatatagtaaataaaatggatataaagataattaattctatgtgtattttttaagaaatactcCCTTTTTATAGTCGGGTTATCTGCCTGTGAGTGCTAAAAATACACAGTCTGCTAACACATATGAAACCTTGAACcctgtattcattaaaaaagtgtaaaagtagtagttgtacatttacaaagaaTTGTCATTAATAACATGGCGCCCCTTGCAAACCGAAAGTAGACTCTGCCAGAACCCTATCTGAACATTGATTGATTGTAGCTGCTGTACAATAGCAATAACAtgtattatatgtttatatcaGGCAGTTGTACATCAGAGTATTGAATAAAGATATGTATTTGtctgagaaaaatgtatttattaatctgaaattcaaattaacTTTTGCGTATCAAGGTAATTCTGTCCACAGCCTGACCATCTGTACAAAGTGCATCTGAT

Function

GO: NA

KEGG:

id description
K23863 OSTM1; osteopetrosis-associated transmembrane protein 1 (chloride channel 7 beta subunit)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5614 lncRNA upstream 62742 26256781 ~ 26257025 (+) True G4595
TU5613 lncRNA upstream 63661 26255789 ~ 26256106 (+) True G4594
TU5612 lncRNA upstream 75130 26244247 ~ 26244637 (+) True G4593
TU5611 lncRNA upstream 75713 26243662 ~ 26244054 (+) True G4592
TU5609 lncRNA upstream 90515 26228928 ~ 26229252 (+) True G4590
TU5691 lncRNA downstream 254642 26582669 ~ 26586870 (+) False AMCG00003962
TU5732 lncRNA downstream 323258 26651285 ~ 26651567 (+) True G4694
TU5845 lncRNA downstream 953977 27282004 ~ 27282241 (+) True G4787
TU5865 lncRNA downstream 1255544 27583571 ~ 27584034 (+) True G4804
TU5868 lncRNA downstream 1393433 27721460 ~ 27776442 (+) True G4806
AMCG00003949 mRNA upstream 40282 26272419 ~ 26279485 (+) True AMCG00003949
AMCG00003954 mRNA upstream 62099 26257426 ~ 26257668 (+) True AMCG00003954
AMCG00003948 mRNA upstream 235881 26081283 ~ 26083886 (+) False AMCG00003948
AMCG00003947 mRNA upstream 299942 26019544 ~ 26019825 (+) True AMCG00003947
AMCG00003944 mRNA upstream 354518 25946643 ~ 25965249 (+) True AMCG00003944
AMCG00003955 mRNA downstream 6606 26334633 ~ 26339261 (+) True AMCG00003955
AMCG00003958 mRNA downstream 11821 26339848 ~ 26365099 (+) True AMCG00003958
AMCG00003957 mRNA downstream 67599 26395626 ~ 26424123 (+) True AMCG00003957
AMCG00003959 mRNA downstream 204122 26532149 ~ 26561121 (+) True AMCG00003959
AMCG00003963 mRNA downstream 239703 26567730 ~ 26578204 (+) True AMCG00003963
TU5497 other upstream 523976 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 1635847 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 2606633 23710238 ~ 23713134 (+) False AMCG00003898
TU4606 other upstream 4395980 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 4559137 21745850 ~ 21760630 (+) True G3771
TU5898 other downstream 1734336 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 1734647 28062674 ~ 28067786 (+) False G4831
TU6431 other downstream 3943183 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 4559968 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 6802093 33130120 ~ 33131186 (+) True G5642

Expression Profile