RNA id: AMCG00003963


Basic Information

Item Value
RNA id AMCG00003963
length 2757
RNA type mRNA
GC content 0.53
exon number 4
gene id AMCG00003963
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 26567730 ~ 26578204 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACACAGCAGGCGAGCCGCGTCACGTCACGCGAGAGGGCACAGGCAGGAGAAACACGGCGGACAGGAGCACGACCGCGGCGCCGTGGACACTCGGGACGCCGCCCGCGATGCCAACTTTCCGGGATCCCTTCGGGTGTGGACGAAAGAAGACCATCGCACTGTGTTAAAATAGAAAGAGAAATGGAAGACCCAGCTATTGACTGCTCGACAGGCTGCAATATAACTGAAAGCAACAGAGGGAGGGTGCTAATCAGCAGTGTGGAGGCTAGCAGCAAACGCACCAACACACAGATTGTTGCAGACAGTCCAGGCAATGAACAGGACCAGCCCACCGACATAAAAAGAGTGAAAGTGTCAGCAGAGgGAGGTAAAACCGCTGAGCAGCCACAGGACGTTCAGAGAAACGCAGGCAACACGAGCAGATCGAGGCTTTCGAGTGTGATGTCATCCAATGAGAACAAAGACCCTTCTAATGAGAAGACAATAGCCTCTTACAGGAAGCCGCTGTACAGCATTTCACACAAGatcacagaaaagaaaaccactCTGGGTCTCGATCAGCACTCTCTGCACGAAGCCGGGGACAGACTGAACTACAACAGCCTCTTATTTCCCAAAAGCCTCGGGGAGCTGGGCAGGAGGGAGGCCAACACAGCGATGGCCACCACAGCTGCAGAGAGCGACTCCAACATTTACTCTCTGATTGAAAAGATGTTTTTCATCCTCAACACGCTGAACTCCAGCATGACGCAGCTTCACAGCAAAGTGGACTTGCTCTCCCTGGAGGTCACTCGCATTAAGAAGCGCATCAGTCCCACCGAGCTGGTCGCAGAGTTCCAGCCTCCTCCCGAGTATCAGCTGAACACGGAAGAGCTGAAGCAAATCCTGGACCAGACCTCTGCGCCGGGCGAACTGGCCTGCAGGCTGCTTGTCCAACTCTTCCCCGAGCTTTTCACAGTGGAGGACATCAACACGAACTGCAACGCCTGTGAGATTGTGAGCAAGAAGAAACTGGACTCTCTTCACTTGCAACTCATTCGCAATTACGTGGAAGTCTGCTACCCTTTAGTCAAGAATGGCAGTTCTTGGCAGGTGGAGTGCCTGCCCCAAATCAATGACTTTTTTAACCGGTTCTGGGCGCAGAAGGACATGGAGAGTGGGCAGGTGGGGAAAAAAGGGACTCCATTGGCACATGGGTATGAGCCAGATCAGACACCGAGCTGCCACTACATTGATGACGAGGGGCAGGATGAGAGCCTGTCGTTGGAGTCCAGCAACAACAACGCCGTCCCTGACCTGGTGTTAGACGCTCAGGACATTGTTGAGTATCTTGACGATGTGTCTTCCCCTGGAGATTTTGCCGTGTTCTTAATGCATCGCCTTTTCCCCGAAGTCTTCGAGCAAGGCAAGAGCAGCGAAGGCTACAGCTGCTACGGCGGGATGGGGAAGCAGATCCTCGACTCGGAGAGGCTAGAGATAATCCGGAAGTACATGGAGGCCTACTTCCCTGACTTCCAGGAAGAGAGCTGGCTTCAGCTGTGTGTTCAGAGAATGGAAGAGGAGCTGGAAAATGTGCACGGTAACGGCAGTGAGTCTGAAAACGCCAGGGATGAAAGCTATGACTCGGCCAGCCTCCCCGACGACGTGTCTGTTGTAAAAATCGGGGATTTCTGTGACTTTGAGAAACCTGGGCGCAGGTCGAAAAAAATTTGGTTGGTGCCCATCGACTTCGATAAAATTGAAATCCCAGTTCTGGATTTTGAGGTCCCTCCGGAGTATTTGCTTACAAAAGAACAACTCAAGAATAACTACGAGTGCAGTTTGTCTATCGGAAACTTCGCCTCGCGCTTGTTGGTTCTGATGTTTCCTGAGCTCTTTACTTACGAGAACCTGAGGAAACACTACAACTGCAGTGGCTCTCTGGGCAAGAAGCAACTGGATCCCATGCGTATTAAACTGATTAGACATTACGTGCAGCTCCTTTACCCGCGGGCCAAGAACGACAGGGTTTGGACCTTGGAGTTTGTGGGCAAACTGGATGAAAGATGCCGGCGCAGAGACACTGAGCAGCGGCGCTCCTATCAGCAGCAGCGTAAGGTGTACATTCCTGAATCCGAACAGCGAGATTTTGTCACCTGCCCGTTGAACCCAGAGCGACTTCGCGAAGAATTTGAGATCCCTCCATTGCCCCCGGAAAGGAGCTCGAAAGACTTCTGTAAGATCCCTCTAGAGGAGCTGGCCGTACCCTCTCCTGATTTCCCCGTGCCTTCGGTTTACCTGCTCTCAGATTCGGAGATCAGAGAAATCGTTCAGCAGAGTCTCTCGGTTGGGAATTTCGCAGCTCGTCTTCTAGTCAGACTGTTCCCAGAGCTGTTCACTCAAGAGAACCTCAGACTCCAATACAACCACTCTGGTGCCTGTAACAAGAAACAGCTGGACCCAATCCGATTGAGGCTGATCCGCCACTATGTGGAGGCCGTGTACCCGGTGGACAAGATGGAGGAGGTCTGGCATTACGAGTGCATACCCAGCATCGACGAGAGGTGCAGGAGGCCTAATCGGAAAAAGTGTGACATTCTCAAGAAAGCTAAGAGAGCCAATACTGTCCTTGTAGTCCTTGGGCAGCCCATCGTCGTCCTGAAGCTCTTCCTCATGGTCACTGTTCTCTGGGTCATcgtccacctcctcctcctcatcgtGCTGAGTCTTTTTCCCTCGCATTTTGGAGCTCTTGCTGCCTTTGAACCTCACTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5614 lncRNA upstream 310705 26256781 ~ 26257025 (+) True G4595
TU5613 lncRNA upstream 311624 26255789 ~ 26256106 (+) True G4594
TU5612 lncRNA upstream 323093 26244247 ~ 26244637 (+) True G4593
TU5611 lncRNA upstream 323676 26243662 ~ 26244054 (+) True G4592
TU5609 lncRNA upstream 338478 26228928 ~ 26229252 (+) True G4590
TU5691 lncRNA downstream 4465 26582669 ~ 26586870 (+) False AMCG00003962
TU5732 lncRNA downstream 73081 26651285 ~ 26651567 (+) True G4694
TU5845 lncRNA downstream 703800 27282004 ~ 27282241 (+) True G4787
TU5865 lncRNA downstream 1005367 27583571 ~ 27584034 (+) True G4804
TU5868 lncRNA downstream 1143256 27721460 ~ 27776442 (+) True G4806
AMCG00003959 mRNA upstream 6609 26532149 ~ 26561121 (+) True AMCG00003959
AMCG00003957 mRNA upstream 143607 26395626 ~ 26424123 (+) True AMCG00003957
AMCG00003958 mRNA upstream 202631 26339848 ~ 26365099 (+) True AMCG00003958
AMCG00003955 mRNA upstream 228469 26334633 ~ 26339261 (+) True AMCG00003955
AMCG00003956 mRNA upstream 239703 26319767 ~ 26328027 (+) True AMCG00003956
AMCG00003962 mRNA downstream 4463 26582667 ~ 26586892 (+) True AMCG00003962
AMCG00003964 mRNA downstream 56273 26634477 ~ 26650391 (+) True AMCG00003964
AMCG00003969 mRNA downstream 143686 26721890 ~ 26754415 (+) True AMCG00003969
AMCG00003971 mRNA downstream 300498 26878702 ~ 26879865 (+) True AMCG00003971
AMCG00003977 mRNA downstream 802355 27380559 ~ 27382002 (+) True AMCG00003977
TU5497 other upstream 771939 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 1883810 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 2854596 23710238 ~ 23713134 (+) False AMCG00003898
TU4606 other upstream 4643943 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 4807100 21745850 ~ 21760630 (+) True G3771
TU5898 other downstream 1484159 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 1484470 28062674 ~ 28067786 (+) False G4831
TU6431 other downstream 3693006 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 4309791 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 6551916 33130120 ~ 33131186 (+) True G5642

Expression Profile