RNA id: AMCG00003964


Basic Information

Item Value
RNA id AMCG00003964
length 2143
RNA type mRNA
GC content 0.45
exon number 9
gene id AMCG00003964
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 26634477 ~ 26650391 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTAGTGAAGTGCTGGTGTTTGGGTCCGATTGAACCGGGATTTTACAGAAGTGAACTCTGTTACTGGCAGTTTGGACTAGAGGGGTTCTAGTGATAATTACAACAGAAAAGGTGTCAGAGGAACAGGAAGAAGTAGTCTcaatcttaatttatttaagcaCTTTCAGTTTAAcgttaaattgaaataaaaccttTGCAACGTGCTGCACTCATAATTGCACACAGCGTCTGTAGAGAAACCTATGCAAGGGCGTTGATGCGTGTCCATTGCAATATAACGATATAGGCTAACGCATATGCATATTTATCGTGATCTGCACAGTAAAACGTATGGTTTGATACATATTTCCAAGCAGTGGACATTTTAGCTATTGCTGTTACTGCTGTAACGTAGGAAATCATAtttgctgattataatattaaaactcACAGTGTGAAATTACCGAGTGAAGATGCTGTGTCCAATTAGAGTGGTGGCATGTAGAAAATGGGCATCTTTCTCTTATGTGAAACCCATTGGCATGACTGCGGAAGTGGGTGGAAATTTGTACGGCAGTTCATTCAACACATTCAGCACCTCTGCAAAGCGGCAGACCATTATGCCAGCGTGGGTGATCGATAAGTATGGCACCAATGAAGTACTGCGGTTTActaaaaatgcaatgtttccCATCATCAACTACCCCAATGAAGTGATTGTCAAAGTTCAGGCTGCAAGCTTGAATCCCATTGACATTACCATGAGATTGGGCTATGGTGCAGCTACAATGAACATGAGACGTGATCCGTTGAATATCAAGGCAACGGGCAGCGAGTTCCCATTAATTTTAGGGCGAGATGTCTCCGGTGTTGTTATGGAATGTGGATTAAATGTGTCATATTTCAAACCTGGAGATGAGGTGTGGGCTGCAATTCCTCCCTGGAAACAAGGCAGTTTAGCGGAGTTTGTAGTACTAAGTGGAAATGAGGTGTCGCACAAACCTAAAGCACTGAGCCACACACAGGCTGCAGCCATTCCCTACGTAGCAGCGACTGTGTGGTCTGCTGTGGTGAACACAGGAGGGCTGAATAAGGATAACTGCACTGGAAAACGGCAAGTCCCCCCACCCGTCATTTTAATAATTGGTGCTTCGGGGGGAATAGGAACATTTGCAATTCAGCTGCTGAAAGCCTGGGATTCGCATGTAACTGTGACTTGCTCCCAGAATGCCGAGCAGCTAGTGAGGGGTTTCGGAGCAGACCATGTGGTGGATTACAGAGCAGGGGATGTGGAAGCAAAGCTCAAGACCCTGGAAAAgtTTGATCTGATTCTTGACAACGtgggaggagagacagagaaatggGCACTGAGTTTCCTGAAGCCCTGGTCAGGAGCCAAATATGTCACATTGGTGACACCTTTTCTGCTCAACACAGATAGGCTGGGGGTTGCAGATGGAATGCTACAAACCGGAGTCACCATTGGCACTAAGGCGCTAAGGCATCTGTGTAAAGGAGTGCACTACCGCTGGGGGTTCTTCGCTCCCAGTGGGCCTGCTCTGGATGAAGTCAGGGAACTGGTTGATGCTGGAAAGATCCGCCCTGTCGTAGAGCAGCAGTTCTCCTTCCCAGAGGTTCCCCAGGCCTTTGAGAAAGTGGAGAAGGGCCACGCGAGGGGGAAGACTGTCATCAGCATCGCCGAGGTGTCCGAGTAGTCGCTCCTCTTCCTGCTTCCAGCTGTGCTGCTGACGTATGAAAGACTTTCCCTTTTCATAAAACTATCCAGGTTCACACTGGCACGGCTGAGAACCACTGGCTATGATCAACATGACAGATACAAACTATATGTTTATACAATCATCTTTAAGTGTGTTAAGAAACtctttattaaaacagaaatcaaactcaAACAcgtgtgcttttgttttatccCCCGAGATGCTCAGCTGCAGAAAATGGCCAGTACACAATATTCTTATCAGCAGTGGTGACATTTTGGGAGGTAAATCAATTTCAAATGCTTGACTATAATTTCCAGTAGCGTTCCAAAACAAATCTTGAAATATCTGTGAAAGGCTTGAGGAGATACTAAGACCTTCTGAGCTCTTCTGATTCTTATCAGGTTCAATTTACATCCCTAACCTGTGGTGCAATGTGTACACC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005739 mitochondrion cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23164 RTN4IP1; reticulon-4-interacting protein 1, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5691 lncRNA upstream 47607 26582669 ~ 26586870 (+) False AMCG00003962
TU5614 lncRNA upstream 377452 26256781 ~ 26257025 (+) True G4595
TU5613 lncRNA upstream 378371 26255789 ~ 26256106 (+) True G4594
TU5612 lncRNA upstream 389840 26244247 ~ 26244637 (+) True G4593
TU5611 lncRNA upstream 390423 26243662 ~ 26244054 (+) True G4592
TU5732 lncRNA downstream 894 26651285 ~ 26651567 (+) True G4694
TU5845 lncRNA downstream 631613 27282004 ~ 27282241 (+) True G4787
TU5865 lncRNA downstream 933180 27583571 ~ 27584034 (+) True G4804
TU5868 lncRNA downstream 1071069 27721460 ~ 27776442 (+) True G4806
TU5870 lncRNA downstream 1126899 27777290 ~ 27777659 (+) True G4808
AMCG00003962 mRNA upstream 47585 26582667 ~ 26586892 (+) True AMCG00003962
AMCG00003963 mRNA upstream 56273 26567730 ~ 26578204 (+) True AMCG00003963
AMCG00003959 mRNA upstream 73356 26532149 ~ 26561121 (+) True AMCG00003959
AMCG00003957 mRNA upstream 210354 26395626 ~ 26424123 (+) True AMCG00003957
AMCG00003958 mRNA upstream 269378 26339848 ~ 26365099 (+) True AMCG00003958
AMCG00003969 mRNA downstream 71499 26721890 ~ 26754415 (+) True AMCG00003969
AMCG00003971 mRNA downstream 228311 26878702 ~ 26879865 (+) True AMCG00003971
AMCG00003977 mRNA downstream 730168 27380559 ~ 27382002 (+) True AMCG00003977
AMCG00003972 mRNA downstream 779699 27430090 ~ 27449894 (+) True AMCG00003972
AMCG00003973 mRNA downstream 842115 27492506 ~ 27506149 (+) True AMCG00003973
TU5497 other upstream 838686 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 1950557 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 2921343 23710238 ~ 23713134 (+) False AMCG00003898
TU4606 other upstream 4710690 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 4873847 21745850 ~ 21760630 (+) True G3771
TU5898 other downstream 1411972 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 1412283 28062674 ~ 28067786 (+) False G4831
TU6431 other downstream 3620819 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 4237604 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 6479729 33130120 ~ 33131186 (+) True G5642

Expression Profile