RNA id: AMCG00003969


Basic Information

Item Value
RNA id AMCG00003969
length 4156
RNA type mRNA
GC content 0.44
exon number 24
gene id AMCG00003969
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 26721890 ~ 26754415 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATTCCTCGGCGAAGAACAGAGGTTTGTTATTAGGGACCATGTCTCGCCGCCTTACAAAAGAAGAGTTAGATGAACAGTTTGAGCAGTTCTTAAAAGAGTCTGTCTCCGATGATTCCCTTGACCTGGGTGGTACAAAACGGACAAGTGTTTTAGACAGTCTGGTGAAAGCAACAGAGACAGAAAGCAAGAATCCAGCCTCTAGGCCCTGGTGGAACAGTGATGAAGATGACAATGAGAATCCATCTGCAAGAGGAATGCTGGGAACAGGAAGGAGTTTCCTCAAATCAATGAGAAGCTCCCAGCCTATAGAAGAGGAAAATGAGGAAcaactaaaggaaaaaaaaagtgaccaaGAACCCAATCCTGTGTCTTTCACCCGAGACAGTCTAGAGCCTGAAGAGTCAGTTATGGCATCAGGACCGGGCCAGAACGGTACTGGCTTTGGAATGGACACTTTggatgaggaggaagagaaagccAGGTTTTTTGCAAACCTAGAAAGGGGAGCTTCATCTACAATTGATTACTCCAAGTTAAATAAAGATCTAGACTCAACAGACTCCACTGTTATAACTGCACTGAGAAATGGAGGATACCTGAAGACCGAAAAGGAACAGAGTCGGGATGAAATGGAGGATTCTAAGAGTGCTTCGGTGTCTCCTAATTACAGTGAAGATTTTGAAGATGAAGCCAGTGGAAAGGAAGTTCAAGATCAGaaacCAAAAGGACCTGTGATGCTAGCaaaagCTTCATATGGACAAAGTGGGGCCAGTGACATTGAAGCCTTACAAGAAGCCTACAGCAAGATTAATGATTCCCTAGGAGAGTCAATAGATCGggaacacaatacaataatgagtgaaaatctaaagaaaaaaagttcCTTGCCCCAAATGCTTGAGGATGCAACAGAAATGGAACAACATGTTACTACCACAGAATCAGACTTGCCTACAGCAGAGGAACTGATGAGGCCCATCGGATTGGAATCTGGCTTTGCTCGTGGGTTTGCATTACAGGTAGtcagTGAAAATGGACCACTGGCTGAGAGAATGGATGACTTTTCTAATAAGATGTCCTTGGTTGGGCAGCACATGGATTCAGCACATGGAGGTCAGAGAAAACAGCTGAACTGTGGTCTCCTATGTGTCAGCGGGGAAGCAGTGACAGACAGTCATAAGAGAATTGCTGATCAAGTGGAGCACTTAATGGAATATGTGGACGATTCCAAAATTAGTAGACTTCCAAAGCACTCTTCCCCTGTTCACAATAAAAGCAGAAAGCAGCAAgCATCCGAGTGGTCTCGTGAGTCATGGGGGAAGGATTCTTTTGGTCGAGAAATGGCGCCAAAACAAATGAGAAGTTATcaaacaaaaagtacaaaaaaggTTAGTGGCACCAGTCCAGCAGTCAAGACTTACGGGTTCAGCAAAGGTATTCCATCAGCAAACCACTTTTCTTCTGTCAGTGAAAAGAAGACCTTAAACCAAGATACTGATCATTCTGATGATTTTCTACAGGCCTTTCCAGGTGAAAACCCTAAGCCAGGATCTTCAGGGAATCTCCAAAGAGAAATCTCTCTTCTTAAGCGGGCAGAGGAAGCTCAAGAAAGATGCAGTGCAGAGCACAGCTTGGCAGAGAAGTTAAGAGCAGAACTAATACAGAAGGAAAAAGAACAGAAGATCAAACAAGAGGAACTTAGACTTGCACATGGCAAAGAAGTATTTCAACTGAAACAAGAAAATTACATTCTCCAGACTAAGCTGCACAGTATGGAGGAAGAAGccaaaaagaagaaattaattTTTGGAGATGCTGCTGATCCTGTGACAGAAGAAAAATTGAAACTGATAGAAAAGGATGTAAAAGAGCAAGAGGTTCTCATTCAGGGTTATCATCAGGAGAACGAAAAGCTGTATAGACAGGTAAAGGAACTGCAAGCACAAAATAAGCTGAACGAGGACAAAATGTTCCAAGAAAATCAACGTTTAATGACTGAACTAGCACTAACAAATGAACAGATGACCAGGAATACCTTGCAAAAGAATGTAGAAGAGCACAAAGAGCCGAGCAACGATCACAGTTTTTCAGAGCTTCTGGTACATCTACGTGCTGCTCAGAAGGATGAGGCAAAGTATCTGGAAGAAATACGAAGACttaaacaagacaaacaatCCCTAGAGGTAGACCTGGAACTTATGAAAAAGGAGAGGGATCTTGCAAAAGCCCAAAAGATCATGGAAGAACAATACAAGCAAGAGGTAGCTGACTTAAAAAAGAGATTGCAGTGGTATGCAGAAAACCAAGAGCTGCTTGATAAAGATGCCTTGAGACTCAAAGCAGCGTCCACGGAGattgaaaaactgaaagcacagGTGGAAAAACTCAGTGTTGAGGTAGGAAACCGAAACATTCAACAGCAAAGAAAGATGAAGGAGAGAGTGGGTGATGCAAGGAGAATACAAGACCTGGAGCGACAGGTGAAGGAAATGGAGGAGATTATCAAGAGACGACATCCAAACTCCCTTCCTGCCCTGATCTATGCAGCCGCCTCTGCAACAGCAGGTGAAGGTGGAGTCTCAACCACACCAGAGACTGCAGCCTTCCTGGAGAGACGGGTCAAGAGGCTGGAGGCTGAGCTGGAAGGCAAAGATGAAGCCGCCAAGATGAGCCTTCGAGCCATGGAGCAGCAGTATCAGAAAATAAAGATCCAATATGAACAAAGGATTTCTGATTTGGAACAACTGTTGTCCGATAAACTAATTCACGAAAGAGTTGATTCTGAGGAATGGGCTCTGAAGGCCAAGTCTTTGGAAGAGGAATTAGGCcaattaaaaaaggtttatcAAACTAAGGAAAATGTTCTCCAAAGAGAAATAGACTCCCTAGAAAAGCAGCTTCTACAGACTGAGCTGAAAGTGACTGGCAACCATAGGGAAAGTCCCCAAAGACCGGGAAAGCAAGTGGAAggggcatttaaaaaacatctgGATAAACTAAACAAGGAATTAACTGCCAAGAATAAAACCATTCAAGAGCTTTCAAAAACGGTGGAGAAGCTTCAGAGGGAGAGGAGGTCTATGCTTTCTGGGCAGACCGCAGATGGAAAAGTGTGTGAAAATAAGATGGCGTCgaacaaaagaaacaagaagGACCCCCTCCCTGCAGCCGACGTGAACACAGTGGCAGATGTGGTTCCCTTTCCTGCAACCCTGGATGAGAAGGACTACCAGCCCCATGCCTTTGCTGGTTTGCATATTTCAGAGGTACTGCAAGAAAATGAGCGACTGAAGTCAGAGCTGGAGCACTGCATGTTGGGGATGGATCGGCAGAGAGTCGAAATGCAGGCAGCAGTTGCACAGGCGGAAAGTGAAGCAAGAAGGGCTCAAGACTATGCTGCTGAGCATGTTTCATCATTAAAAGCTGAACACCAGAAGGATTTGGAGCACCTTGTTACACAGCACGCTTTGGAACACTCTTCATCTAAAGTTGCCGAACTTACAAATAAACTCTCTACACAAGAgataatGATAGAGCATTTGCGTGAGCAAGTTAATGAGCTTCATAAAAGCAAAGAAGCTCTGGCTGTTCTACATATTCGTGAAGAAACTCTGCAAAGCCAGATGGCAAAGCTGTTGGAAGAACTGAAAGAAGCCAAAGAGGCTCATAGTCCAGAACTGAAGCACTTCTCCGCTCTAGAGAGACAAATCAAGAACATGGAGATGAGACATTTGCACAGAGAGCAGGAACTCCAACAGATAATCATGCAGGGCCGTCATGTTGCCGGTGAGGAGCAGCACAGCGAAGTGGAGAAGTGGAAGAAGCTCGCCCAGTTGAAGACGCGGGAGCTTGAGGCCTTCCGGGTGGAGCTGGACTCGATACTGGATGTGCTGCGGGAGCTGCAGAGGCAAGGCGTTGTCATCCCAGCCCCCAGCAGTGCTGTGAAGAACTTTACAGAGCTCATGTGGAGGACTTGACAGTGCAGGTGCAATAGGACTTGACAGTGCAATAGTTACTTGAACCTGTTAATATCGGactgtgatttttgtatttttgggtCCAGTAATCATACTTAACCAATTATAGaaagtgtatattatatttctaGAAGGTGCCTAAGGGTGAGTGAGGATTGTTTGGTTTTTTATATGTgga

Function

GO: NA

KEGG:

id description
K16809 CEP162; centrosomal protein CEP162

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5732 lncRNA upstream 70323 26651285 ~ 26651567 (+) True G4694
TU5691 lncRNA upstream 135020 26582669 ~ 26586870 (+) False AMCG00003962
TU5614 lncRNA upstream 464865 26256781 ~ 26257025 (+) True G4595
TU5613 lncRNA upstream 465784 26255789 ~ 26256106 (+) True G4594
TU5612 lncRNA upstream 477253 26244247 ~ 26244637 (+) True G4593
TU5845 lncRNA downstream 527589 27282004 ~ 27282241 (+) True G4787
TU5865 lncRNA downstream 829156 27583571 ~ 27584034 (+) True G4804
TU5868 lncRNA downstream 967045 27721460 ~ 27776442 (+) True G4806
TU5870 lncRNA downstream 1022875 27777290 ~ 27777659 (+) True G4808
TU5905 lncRNA downstream 1349795 28104210 ~ 28105707 (+) True G4837
AMCG00003964 mRNA upstream 71499 26634477 ~ 26650391 (+) True AMCG00003964
AMCG00003962 mRNA upstream 134998 26582667 ~ 26586892 (+) True AMCG00003962
AMCG00003963 mRNA upstream 143686 26567730 ~ 26578204 (+) True AMCG00003963
AMCG00003959 mRNA upstream 160769 26532149 ~ 26561121 (+) True AMCG00003959
AMCG00003957 mRNA upstream 297767 26395626 ~ 26424123 (+) True AMCG00003957
AMCG00003971 mRNA downstream 124287 26878702 ~ 26879865 (+) True AMCG00003971
AMCG00003977 mRNA downstream 626144 27380559 ~ 27382002 (+) True AMCG00003977
AMCG00003972 mRNA downstream 675675 27430090 ~ 27449894 (+) True AMCG00003972
AMCG00003973 mRNA downstream 738091 27492506 ~ 27506149 (+) True AMCG00003973
AMCG00003980 mRNA downstream 1308140 28062555 ~ 28094602 (+) True AMCG00003980
TU5497 other upstream 926099 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 2037970 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 3008756 23710238 ~ 23713134 (+) False AMCG00003898
TU4606 other upstream 4798103 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 4961260 21745850 ~ 21760630 (+) True G3771
TU5898 other downstream 1307948 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 1308259 28062674 ~ 28067786 (+) False G4831
TU6431 other downstream 3516795 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 4133580 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 6375705 33130120 ~ 33131186 (+) True G5642

Expression Profile