RNA id: AMCG00003972


Basic Information

Item Value
RNA id AMCG00003972
length 858
RNA type mRNA
GC content 0.48
exon number 6
gene id AMCG00003972
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 27430090 ~ 27449894 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGCTTCAGTATCCAGATTGTACTCAGCAGGCAGTCACCCTCTTCAATGATGGGACTGATGCTGCTTTAATGTATGATGCTGTGCATGTGGTGGCAGTGGCAGTCCAGCAGTCCCAGCAGATCACCGTCAGTTCTTTGCAATGCAACCGACACAAGCCCTGGCGCTTTGGAAACCGGTTCATGGCTCTCATCAAAGAGGCCCACTGGGAAGGCTTAACAGGAAGGATAACTTTCAACAAAACCAACGGCTTGAGGACAGATTTTGATTTAGATGTGATCAGTCTGAAGGAGGAAGGCCTTGAAAAGattggAACCTGGGACCCACCAAGTGGTCTGAATATGACTGAGAACCAAAAGGGAAAATCAGCCAATATTACAGATTCCTTATCCAACCGATCCTTGGTTGTTTCCACCATACTAGAAGAGCCGTATGTGATGTTCAAGAAGTCTGATAAACCGCTCTATGGGAATGATCGGTTTGAAGGGTATTGCATCGACCTCCTCAAAGAGCTGGCCAATATCTTGGGATTTACGTATGAGATTAGGCTGGTGGAGGACGGGAAATATGGAGCCCAGGAAGAAACAACTGGTCAGTGGAATGGGATGGTGAAGGAGCTCATGGACCACAAAGCTGATCTTGCAGTTGCTCCCCTGGCTATCACCTATGTCCGGGAGAAGGTCATTGACTTCTCCAAGCCCTTCATGACGCTGGGAATAAGTATTTTGTACCGCAAGCCCAATGGTACAAACCCTGGTGTTTTCTCCTTCCTGAATCCACTCTCCCCTGATATCTGGATGTATATTCTGCTGGCTTACTTGGGTGTCAGTTGTGTGCTGTTTGTCATAGCCAGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5845 lncRNA upstream 147849 27282004 ~ 27282241 (+) True G4787
TU5732 lncRNA upstream 778523 26651285 ~ 26651567 (+) True G4694
TU5691 lncRNA upstream 843220 26582669 ~ 26586870 (+) False AMCG00003962
TU5614 lncRNA upstream 1173065 26256781 ~ 26257025 (+) True G4595
TU5613 lncRNA upstream 1173984 26255789 ~ 26256106 (+) True G4594
TU5865 lncRNA downstream 133677 27583571 ~ 27584034 (+) True G4804
TU5868 lncRNA downstream 271566 27721460 ~ 27776442 (+) True G4806
TU5870 lncRNA downstream 327396 27777290 ~ 27777659 (+) True G4808
TU5905 lncRNA downstream 654316 28104210 ~ 28105707 (+) True G4837
TU5991 lncRNA downstream 948969 28398863 ~ 28399688 (+) False AMCG00003988
AMCG00003977 mRNA upstream 48088 27380559 ~ 27382002 (+) True AMCG00003977
AMCG00003971 mRNA upstream 550225 26878702 ~ 26879865 (+) True AMCG00003971
AMCG00003969 mRNA upstream 675675 26721890 ~ 26754415 (+) True AMCG00003969
AMCG00003964 mRNA upstream 779699 26634477 ~ 26650391 (+) True AMCG00003964
AMCG00003962 mRNA upstream 843198 26582667 ~ 26586892 (+) True AMCG00003962
AMCG00003973 mRNA downstream 42612 27492506 ~ 27506149 (+) True AMCG00003973
AMCG00003980 mRNA downstream 612661 28062555 ~ 28094602 (+) True AMCG00003980
AMCG00003982 mRNA downstream 648166 28098060 ~ 28098326 (+) True AMCG00003982
AMCG00003983 mRNA downstream 809802 28259696 ~ 28275388 (+) True AMCG00003983
AMCG00003985 mRNA downstream 904621 28354515 ~ 28369974 (+) True AMCG00003985
TU5497 other upstream 1634299 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 2746170 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 3716956 23710238 ~ 23713134 (+) False AMCG00003898
TU4606 other upstream 5506303 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 5669460 21745850 ~ 21760630 (+) True G3771
TU5898 other downstream 612469 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 612780 28062674 ~ 28067786 (+) False G4831
TU6431 other downstream 2821316 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 3438101 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 5680226 33130120 ~ 33131186 (+) True G5642

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00019308 True 7641 mRNA 0.41 16 NC_007127.7 1803462 ~ 2105556 (+)
grasscarp (Ctenopharyngodon idella) CI01000065_01452148_01608735.mRNA True 2613 mRNA 0.51 14 CI01000065 1452148 ~ 1608735 (+)