RNA id: AMCG00003973


Basic Information

Item Value
RNA id AMCG00003973
length 642
RNA type mRNA
GC content 0.48
exon number 3
gene id AMCG00003973
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 27492506 ~ 27506149 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaactaaaatatcaaCTTACGACAAGATGTGGGAATTTATGAGCAGCCGAAGACATTCTGTACTTGTCAAAAACAATGAGGAAGGTATCCAGCGCGTGCTCACCTCTGATTATGCCTTCTTAATGGAATCAACAACCATTGAGTTTGTTACACAGCGGAACTGTAACCTGACACAGATTGGGGGCCTTATAGATTCCAAGGCGTATGGAGTCGGCACTCCCATGGGCTCTCCATACCGGGATAAGATCACCATTGCGATTCTGCAATTGCAGGAGGAAGGCAAGCTCCACATGATGAAGGAGAAGTGGTGGCGGGGAAATGGCTGCCCCGAAGAGGAGAGTAAAGAAGCCAGTGCTCTGGGGGTGCAGAATATCGGAGGCATCTTCATCGTGCTGGCAGCGGGCCTCGTGCTCTCAGTGTTTGTGGCAGTGGGAGAGTTCTTGTATAAAtccaaacaaaatgcacaacTTGAAAAgAGGTCCTTCTGTAGTGCCATGGTGGATGAGCTAAGGGTGTCTCTGAAGTGTCAGCGTCGTCTCAAACACAAGCCCCAGGCCCCTGTCATGGTAAAAACAGAAGAAGTTATCaacatgcacacatttaatgACAGAAGATTGCCAGGCAAGGAGACCATGGCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5845 lncRNA upstream 210265 27282004 ~ 27282241 (+) True G4787
TU5732 lncRNA upstream 840939 26651285 ~ 26651567 (+) True G4694
TU5691 lncRNA upstream 905636 26582669 ~ 26586870 (+) False AMCG00003962
TU5614 lncRNA upstream 1235481 26256781 ~ 26257025 (+) True G4595
TU5613 lncRNA upstream 1236400 26255789 ~ 26256106 (+) True G4594
TU5865 lncRNA downstream 77422 27583571 ~ 27584034 (+) True G4804
TU5868 lncRNA downstream 215311 27721460 ~ 27776442 (+) True G4806
TU5870 lncRNA downstream 271141 27777290 ~ 27777659 (+) True G4808
TU5905 lncRNA downstream 598061 28104210 ~ 28105707 (+) True G4837
TU5991 lncRNA downstream 892714 28398863 ~ 28399688 (+) False AMCG00003988
AMCG00003972 mRNA upstream 42612 27430090 ~ 27449894 (+) True AMCG00003972
AMCG00003977 mRNA upstream 110504 27380559 ~ 27382002 (+) True AMCG00003977
AMCG00003971 mRNA upstream 612641 26878702 ~ 26879865 (+) True AMCG00003971
AMCG00003969 mRNA upstream 738091 26721890 ~ 26754415 (+) True AMCG00003969
AMCG00003964 mRNA upstream 842115 26634477 ~ 26650391 (+) True AMCG00003964
AMCG00003980 mRNA downstream 556406 28062555 ~ 28094602 (+) True AMCG00003980
AMCG00003982 mRNA downstream 591911 28098060 ~ 28098326 (+) True AMCG00003982
AMCG00003983 mRNA downstream 753547 28259696 ~ 28275388 (+) True AMCG00003983
AMCG00003985 mRNA downstream 848366 28354515 ~ 28369974 (+) True AMCG00003985
AMCG00003989 mRNA downstream 866997 28373146 ~ 28379173 (+) True AMCG00003989
TU5497 other upstream 1696715 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 2808586 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 3779372 23710238 ~ 23713134 (+) False AMCG00003898
TU4606 other upstream 5568719 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 5731876 21745850 ~ 21760630 (+) True G3771
TU5898 other downstream 556214 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 556525 28062674 ~ 28067786 (+) False G4831
TU6431 other downstream 2765061 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 3381846 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 5623971 33130120 ~ 33131186 (+) True G5642

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000244_00049224_00062275.mRNA True 1631 mRNA 0.50 10 CI01000244 49210 ~ 62275 (-)