RNA id: AMCG00003977



Basic Information


Item Value
RNA id AMCG00003977
length 423
RNA type mRNA
GC content 0.46
exon number 2
gene id AMCG00003977
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 27380559 ~ 27382002 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gGGATATTTGAATCCATTGAAAGTGGTCCTTCAGGAGCTGAGGAATTAGCGTTTAAATTtgctttaaatacaattaacaggAACAGAACACTACTGCCAAACACAACATTAACGTATGACATCCAAAGGATAAACATCTATGACAGTTTTGAAGCTTCAAGAAAAGCCTGTGATCAGCTGTCTCTCGGGGTGGCTGCCATCTTCGGTCCTTCACACAGCTCCTCAGCCAACGCAGTGCAGTCCATCTGCAACGCACTGGGAGTTCCTCACATTCAGACAAAATGGAAACACCAAGTATCAGACAACAGGGACTCCTTCTACGTCAGCCTTTACCCCGATTTCTCATCTCTCAGCCGAGCCATCCTGGACTTGGTCCACTTCTTCAAATGGAAAACTGTCACAGTGGTGTACGATGACAGCACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU5845 lncRNA upstream 98318 27282004 ~ 27282241 (+) True G4787
TU5732 lncRNA upstream 728992 26651285 ~ 26651567 (+) True G4694
TU5691 lncRNA upstream 793689 26582669 ~ 26586870 (+) False AMCG00003962
TU5614 lncRNA upstream 1123534 26256781 ~ 26257025 (+) True G4595
TU5613 lncRNA upstream 1124453 26255789 ~ 26256106 (+) True G4594
TU5865 lncRNA downstream 201569 27583571 ~ 27584034 (+) True G4804
TU5868 lncRNA downstream 339458 27721460 ~ 27776442 (+) True G4806
TU5870 lncRNA downstream 395288 27777290 ~ 27777659 (+) True G4808
TU5905 lncRNA downstream 722208 28104210 ~ 28105707 (+) True G4837
TU5991 lncRNA downstream 1016861 28398863 ~ 28399688 (+) False AMCG00003988
AMCG00003971 mRNA upstream 500694 26878702 ~ 26879865 (+) True AMCG00003971
AMCG00003969 mRNA upstream 626144 26721890 ~ 26754415 (+) True AMCG00003969
AMCG00003964 mRNA upstream 730168 26634477 ~ 26650391 (+) True AMCG00003964
AMCG00003962 mRNA upstream 793667 26582667 ~ 26586892 (+) True AMCG00003962
AMCG00003963 mRNA upstream 802355 26567730 ~ 26578204 (+) True AMCG00003963
AMCG00003972 mRNA downstream 48088 27430090 ~ 27449894 (+) True AMCG00003972
AMCG00003973 mRNA downstream 110504 27492506 ~ 27506149 (+) True AMCG00003973
AMCG00003980 mRNA downstream 680553 28062555 ~ 28094602 (+) True AMCG00003980
AMCG00003982 mRNA downstream 716058 28098060 ~ 28098326 (+) True AMCG00003982
AMCG00003983 mRNA downstream 877694 28259696 ~ 28275388 (+) True AMCG00003983
TU5497 other upstream 1584768 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 2696639 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 3667425 23710238 ~ 23713134 (+) False AMCG00003898
TU4606 other upstream 5456772 21922636 ~ 21923787 (+) True G3799
TU4563 other upstream 5619929 21745850 ~ 21760630 (+) True G3771
TU5898 other downstream 680361 28062363 ~ 28103211 (+) True G4831
TU5899 other downstream 680672 28062674 ~ 28067786 (+) False G4831
TU6431 other downstream 2889208 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 3505993 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 5748118 33130120 ~ 33131186 (+) True G5642

Expression Profile