RNA id: AMCG00003983


Basic Information

Item Value
RNA id AMCG00003983
length 3828
RNA type mRNA
GC content 0.48
exon number 7
gene id AMCG00003983
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28259696 ~ 28275388 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctcagtgttttcagtttcagagaGAGGCCAATAGAGTTTGCAGGATGTCCTTCCGTAGCCAGTGAAGGGTCAGATGGGAAGGAGAGATCGATAATGCCTCTAGAACCACAGACAgCTGCCTCACAGCATAGCTCGGATATTTTAACTGCAGAGGGATCGCCACAGACTGGAGAGTTCACCATGAAAATGGATATGGAGGATGCTGACATGACAAAGTGGACAGAGGCAGAATTTGAGGAGAAATGCACATATATCGTCAAGGACCATCTGTGGGAAGCCAGCCCGGACAGTGGAGACCTGACTCAGGCTGAAGCCTCGCTGCCACGGAACTTGCTTTTCAAACATGTACCTAATACCAAAGAGgTTATTGGTGTCGCAAGCAAGGAATACATCCCAAAAGGAACGCGTTTCGGACCCCTTGTTGGCGAGATGTACACGACTGAAACTGTTCCCAAGAATGCAAACAGAAAGTACTTTTGGAGgATCTATTCCAGTAATGGCGAGTTTCACCACTTTGTGGACGGGTTTAACGAGGAGAAGAGCAACTGGATGCGCTATGTGAACCCAGCGCACTCGCAGCAGGAGCAGAACCTGGCCGCCTGTCAAAATGGaaagaacatttatttctaCACAGTCAAGCCCATCCCTGCCAACCAGGAGCTGTTAGTGTGGTACTGCCCCGAGTTTGCAGAGCGCCTCCACTACCCGCCTTCTGGGGAACTCATGATGCTGAAACTCAAGCAGAGCCTCAAGGAAGCAAAGCAGCATGCGACGGAGGGTGACAGTAACCACGAGAAGGGTTCGGGGAAGAAGGAGCACAGTGTTTCAGAGATCCTCAAGGGGACGAGCAAGCAACCCAGCAAACCACAGCCAATTCCCACAAAGCCCTTGGACGATTCCCCCAAAAAGCACAGCCCCGAGCAGTCTTTCTTCCCTCGAGTCATCTACCCTGTCCGCCCTCCCATCAACGAAGAGTACTTGAAGGCCAACTCAGTTTACGGTCTAGACCGTCCCAACTACATCACACACTCGCCCATCCAGTCCTCGGCCACCCCCAGCCCCTCGGCCCGCAGCAGCCCAGAGCACAGCCTGCAGAGCAGCAGCCCCCACAGCAGCCCCGGCCTCGCGCtgtcccccccaaccccctcatCTCAGGAACACAAGGAGGGCTTTCCGTTCTCCAATGGACTTTACAGGCCGTACCCGGGTTATAATCCTTCCGGCCACCTCTCCCCCGCCTTCATACATTCATACAACTCAGTCAGCCCTCATTATTCCAGGTACCTGTTACCTCCCTACCCAGTGGGCTGCAACGGTATGAGCAGCCTGAACGGGCTGGGCACCGGACCTGTGAGCAGCCTCTTCCCACGCATGTACCCTCTCTACAGCAACCTGCTGTCGGGGGGCAGCCTCTCCCAGCACATGCTGAGCCACTCGTCTCCTCCTGGCATGCTGTCTTCTGAAGGAGGCCGGCGGCTCCTGCTCCCCTCGGAGCCTCACAGGGACTTCCTCATTCCAGCGCCAAACAGTGCCTTCTCGGCCACCGGCCTGGCTGCCAGCCTGAAGGACAAGCCATGCAGCCCCAACAATGGCTCCCCCACTGCCGGCACAGCGGCCTCCTCCTCAGAGCACGGCATGCCCACCAAACCTACCTCAGCCATGCTCTCCGGCAGCCGGAGCGACGACGAAGCCATGAACCTGAGCAAGATGAAGCGCAGTATCACCGGCTACAAGACGCTGCCCTATCCCTTAAAGAAACAGAACGGCAAGATCAAGTACGAGTGCAACGTCTGCAGCAAGACCTTCGGCCAGCTCTCAAACCTCAAGGTTTGTCACAAGCGCTTCAGCAGCACCAGCAACTTAAAGACCCACCTGCGGCTCCACTCTGGGGAGAAGCCCTACCAGTGTAAGCTGTGCCCGGCCAAGTTCACCCAGTTCGTCCACCTGAAACTACACAAGCGCCTGCACACCCGCGACCGGCCACACAAGTGCCTGCACTGCCACCGCAGCTACATCCACCTCTGCAGCCTCAAGGTCCACCTGAAGGGTAACTGTCTGGCGGCCCCCAGTCCCCGGAGCCGGTCCCTGGAGGAGCTCAACCACATCAACGAGGAGATCGAGAAGTTCGACATCAGTGACAATGCCGACCGCCTGGAGGAGATGGACAGCGTGGACGTGGAGAGCATGGTCGAGAAGCAGATCCTCAACATGCTCTGGAGGGAGATGGACCTCAAGGCTTCGTACCACAAGAGTATGGGCAGCGGGCTACGGCCTACAGGCTACGGCCTGTACGAACCCGGCAACGACGCCTCAGTCATCAAGTTGCCTCACAGTAGCCCACTACCTCTTCTACCTATAAAGGTCAAACAGGAATCTCTAGAACCCATGGAACAGTGAAATTGACTGCCTACCTTTctgaagaaaacataaaacctATTTATGACTTTTTCGCAAGCCAGGGTGCCTGTAGCAATCCAATGTACATAGTCTTCATTGTTGCATAGCAAACTTGGCTTCCTCTGTCAGGGGACCTCAATTCTCAGGGCTTAAAGAGGCGTTGGCAAGGActatttatagttttgttttgttttttcacttgtgTTAAAGACAATCATATACCcatgataattatttttttgttcaatgaTATATCTTCCTTAATTTATTATGCAATTTGTCATAGTTAAAAGCAATAATTGGAAATAATGTTTACAATGATGGGAAAATTCATTGTAATtgaataggttttattttttacttcctttGTGGCCATTCTTTGTAGATGCCTACTTTCTGCACATCTTTGTCACATTAGGAAGACCCTaagattattaaaaagaaagaatgaaagagtAATATACGGTAGTGACAATGAGTATACAATGAGTATACAGTATTCAgggttttgcaaaaaataagGACAAAATAACAGGTTTTTGTATTGCCAAAGGtggacatttaaaatgttgaacCATGGGAtcatttgtgtaaaaaaaaatgtgtagttttttttgttttgtttgttttaccttgTGAGACTTTCCTTTTTCCTCAGTATTTGTGTAGAATTAtggttaatttaattgaaaacaaaagggcattgtgtatattttcaacaaCAGTTACCTCAATCCGTGTGTCCAGTGACGATGGGGAGAAGCTGTAATATTTATTGCTTTGCTACTTGAAAAGTAAAACCAAATGTACTAAAGTCCAGCTTTCAGCTCGGCCCAAAGAATAGGAGAGATCCTTTTAGATGTAGCATGTCGGCTGCAAAACTGGGAATCCATTATTTACAAAGAGAATCTTTGAACTATCAATACCAAAAGGAGATGTCTGAACTTTGGTTTTTGGACATGAGGCTAGTTTCCAAAGTTCAGCTTTTTTCATATACCAAATAAGAGAAAATACTGCTTGTGTAAATAATGAAGTGTTAGGTTCTTAGTTGTGATCTGTATTGTAgctttgtttcatgtttgttttaatctccCCATTGCTTTCATTTATAGCACAGACCAAAGCATCACTACTCTTTCTCTGGACACACTACCTGTCTgtagtgctttttcttttgatatGATTTCACCCATTATTTTTAGCGATAGCTTTAAGATGAACTTGTCTCCCTGCCGACTGCATTTATTACAAGGATCAGCGCCACCGAATGTAGCAGCGCAAGCAGTTAAAAGCTTTTCTCGATCTATGACCAAAGTTTCCCCAGCTCGAGGCGTAAATCTTTAGAGGAAAAACTGTTTCTTATGTTTACATACTGGtttacattgttatttatgTGCAACTTGTCAAATTGTAAATTATGATATACATGTT

Function

GO:

id name namespace
GO:0060351 cartilage development involved in endochondral bone morphogenesis biological_process
GO:0051155 positive regulation of striated muscle cell differentiation biological_process
GO:0007521 muscle cell fate determination biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0014033 neural crest cell differentiation biological_process
GO:0000578 embryonic axis specification biological_process
GO:0045666 positive regulation of neuron differentiation biological_process
GO:0060037 pharyngeal system development biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24501 PRDM1; PR domain zinc finger protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5905 lncRNA upstream 153989 28104210 ~ 28105707 (+) True G4837
TU5870 lncRNA upstream 482037 27777290 ~ 27777659 (+) True G4808
TU5868 lncRNA upstream 483254 27721460 ~ 27776442 (+) True G4806
TU5865 lncRNA upstream 675662 27583571 ~ 27584034 (+) True G4804
TU5845 lncRNA upstream 977455 27282004 ~ 27282241 (+) True G4787
TU5991 lncRNA downstream 123475 28398863 ~ 28399688 (+) False AMCG00003988
TU6005 lncRNA downstream 179045 28454433 ~ 28464850 (+) False AMCG00003990
TU6007 lncRNA downstream 191529 28466917 ~ 28468944 (+) True G4917
TU6014 lncRNA downstream 292796 28568184 ~ 28576934 (+) False AMCG00003991
TU6060 lncRNA downstream 389114 28664502 ~ 28664710 (+) False AMCG00003993
AMCG00003982 mRNA upstream 161370 28098060 ~ 28098326 (+) True AMCG00003982
AMCG00003980 mRNA upstream 165094 28062555 ~ 28094602 (+) True AMCG00003980
AMCG00003973 mRNA upstream 753547 27492506 ~ 27506149 (+) True AMCG00003973
AMCG00003972 mRNA upstream 809802 27430090 ~ 27449894 (+) True AMCG00003972
AMCG00003977 mRNA upstream 877694 27380559 ~ 27382002 (+) True AMCG00003977
AMCG00003985 mRNA downstream 79127 28354515 ~ 28369974 (+) True AMCG00003985
AMCG00003989 mRNA downstream 97758 28373146 ~ 28379173 (+) True AMCG00003989
AMCG00003988 mRNA downstream 104423 28379811 ~ 28399741 (+) True AMCG00003988
AMCG00003990 mRNA downstream 179031 28454419 ~ 28465646 (+) True AMCG00003990
AMCG00003991 mRNA downstream 293437 28568825 ~ 28585674 (+) True AMCG00003991
TU5898 other upstream 156485 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 191910 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 2463905 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 3575776 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 4546562 23710238 ~ 23713134 (+) False AMCG00003898
TU6431 other downstream 1995822 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 2612607 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 4854732 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 6577475 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 7477145 35752533 ~ 35766180 (+) True AMCG00004158

Expression Profile