RNA id: AMCG00003988


Basic Information

Item Value
RNA id AMCG00003988
length 3800
RNA type mRNA
GC content 0.39
exon number 13
gene id AMCG00003988
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28379811 ~ 28399741 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTTGTTTAGTGACCTACAAACGTAAGAAATGACCATACAAAGTGTCTCGGTTGAAAcagattgatgcatttaaatgtcgATGTAAAAGTGAAATATCATTACAATATCACTGTGCGTTTCCAAAGAGGATGTGCTCAGTTTTCAATGTCGGAACTACATGTCAAGGTGGAGGCTGTTTCTTGTAGGATGTGTTTTAAGGGGACATTACAATGGCGCTGCACTGTAGCAGAACGTGTAGgaaatatttattacatgtagCCCAAGAAAACATTGAATTCAGACTACCGgaAATCAAATCCCTGCTTTCGCTCAATGGAGAATCGTTTATCCCAGAAGAAAACTTTGatgaaaagTCCCCATTCTGGGTCCTCAACAGTGTTTCAGAGGAAGGGATAAGAAGGGTTATGAAACGAACTGTGTGTGCAAAGTCAGTATTTGAGCTATGGGGGTTTGGAAGAACACCCCAGGAGTTACAGTCATCGCTGAAGAACTGGCCAGTGGAAAACATGGTTCCCTATCTGACGCGTGACTcaacatacaaaattaatatttatacattcaacAAAACTCTTCTGCATCAACAGAGAATCCAGAAGATAGATGCTCTAGAATTTCTCCCATTCCAAGGGAAAGTAAATTTGAAGAACCCAGACCATGTCTTCTGTCTACTGGAAGACTACGGTTCTGATCCCAATTGCATTCCAGATGAACCCTTTCGTATCTTCTTCGGGCGATGGAAGCGACATTTCATTGGAAACACAAGCATGGACGCTGGGCTGTCCTTTATAATGGCCAATCATGCCAGAGTAAAACCTAATGACTTGGTTTATGATCCATTTGTTGGAACAGgtagCCTTCTTGTTGCATGCGCTCATTTTGGCTCCTATGTATGTGGCACAGACATTGATTACAACACAATCCACGGAATAGGAAAGGCAAGCAGAAAGAACCAGAAGTGGAGGGGACCTGATGAAAACATCAGAGCTAACCTAAGGCAGTACGGAGCAGAGAAATCCTATATTGATGTTCTGGTGTCAGATGCCTCTAAAACCATATGGAGAGCAGGAGCTGTGTTTGATGCCATCATCACAGATCcCCCATATGGTATAAGAGAATCTACAAGGAAAACAGGCTCCCAGAAAGAAATCATAAAGCCACCAGAAGACTACGGTGGAGAAAGTCATGTCCCTGTGTCAATGGCCTATCATCTCAGTGATATCTTCACAGACCTGCTGAACTTTGCATCAAAGTATCTTGTCATGGGAGGAAGACTAGTGTACTGGTTACCAGTGTACAGGCCTGAATACAAGGAAGAAATAATACCCCAGCACCCTTGTCTGAAACTTATTAGCAACTGTGAGCAGACACTTTCCAGTCATACGTCCAGGCGTTTGATAACCATGGAAAAGCTGAAAGAATTTGAGTATACTGACGAGCTCGCACACCTTGTAGAGTCTAAATTCAGCCCATATCAAGGTCACAACTCATTCCGGGAGAAGTACTTCAGTGGCTTAACGAAGAAGACGGGCATGCAGGAGGCTAAGAACTTGAAAATTGAAGGCTGAATCATAGGTTTCTCATTTTCACTCAGGGGACTGGAATATAACACGTTATGCAAATCTGCTGAATATGGAAGCATTTCTTGCTCcgagttttattatttgtttttactatgTTAAATGTGAAGTTTCTTATTCATGTCATCCATTGTTTGTGACTATTTAGATTCAAAATTGCAAGATTGAATTAGTTTCTGAACTACCAAAGATCATTTCTGTTTAGGATTGGGCCATTGTACTCTTGCATTTTGTTGCCTTAATTGTTGTGGTGCAGTTAAGTGATACAATATTCACCGAGTTCGATTCAAACGTGCCCAGTTCTGCATGTTACTGACATCCTAAagctttgtaaatatttgtctAGCATCCAGATACACTATATTGGAACTGTGTATTAATAAATTGTCTTCCATTTAAGCAATGGAATGTATCTGTTAATTTCTTTGGGGGTTGTTTCAAAACtttgatgtaatttttaaataaagttgttAGCTGATGTTTTAATCTTAATACTGGAGAGCCTCTTTTAACTTCATCATTTGATTATTAAatctctgcattttatttttaatatcttgtAGGCCTTCGAATTTAAGCGAGTAAGTGAGGGCAAGCCAACATCTTGACATCCCTGGTACCTGTTCTTAAAAAGCTTCGTTTTTTAGGTAATGTGACTCAGACAGACTTCTCATATACGTTCATGCATCGCTACAATATCAGACTTGCTTTTCAATATAAACACCTATAATTATCTGTATATTGCAGTTTAGTGCtcaaatgtgtatgtgtatctgcCTGTTGATTGTCCTCTGTGCATTTCATAAGCATTCAAGCTCAGCGATTTACAGCTCTCCAGATGTCCTGCCGTTTTTCATTCCAAAACGGCTGATCGTGACAAACTGCAGCCTTTTTTGTTGATGTATTGCTCATCTCTccgctttgttttcttttgccaactttTGAAGGTTTACTTTTTCTAGGGATGGTCTGAGGGATTTGTAACACCCACAGATTTCTGTAGGGAACTGTCATTTGAATCATTGGCATGATAATCAGTAGTCGAGGCTTTGTGGAAAACCCACAGCCTTTTCCAGTGCTGGGCTTATTAATGCGAAGCCAGTGCTCATACATGAAAAAGGTTTCAGCTGTTCATCTCGGTTTGTAACGCACGCTCTGTTTAACAGTACACTGTGTCCGGTTAGCAGAATCAGACACAagttataaaatattttcagcatCTGTCTCACTGTACCCTGAGTGTGAAAACccaaattatttataatatatattttctccatCGACTACAAAGACAGAAGAGACGTGCAGTTCACTGCGGCCTGCTGATTTCCCTAACAGCCTTCTTGTAGTCAAtgcatgttttgtaaaatataattttaatgatatccttggatattattaaaaaatgaatttatgcCATCCATTACCcttgtttaagaaaacaaattgacagGGGGTTATGAATAGCTCCACTGGAGATATTAAAGCTCATTCTTCCAGCGCTAAACTTCATTTGCCAGTTGTTGCCAATTTATAGCTTAGTAAGGCtctcatttatttacatttgggAATGCAAGGCGCCCTGCTGGTGCTGTAACTCTATCCTCTGTACCCCAAGTTCATACGAACGGCTGgtttactttaataaaacacgGACAATGCACCTGGAGATCACTGCAGACAGGTATGTTTAGTGCACAAAAACAGTTGACAAGTACATTAAGAATAAATATCGTAACGCTTTCCTACACTGGTGGTGACTTGGATGCCGTCCATTAGTGTAGAAAAGTTCTTTCTCTTGGCTCTGGTTTTAATACATCTTCTCTCCTAGTTCCCTATTTGAGTGCATTTACAGTTCATGGTGATACTGTAACCTTTAAATTCTAGGCCTGTTCATCTGTGATCTCATTTTCTGACTATTTACTTTCCTTCActcaaaagtatatattttgaacTTGATTACTTTGTGTATACCATCCTAATAGCAGACAAGTTATGAAATTAGTTGTGGATCCCTTCCTGATTATGATTTTTGTTCCCAATGAGGCATTTTgactgaaagaaaattaaaaaagcctctcagaaaacctgtttttctttttatctttatgATGTTATGTTGGGTTTGTGTATTTCTTGTGTAAAAATTAAACCCTTCTACAACCCTTCCTGAGGCTAATCAATGACATTGAAGTATGTTTAATACATCACCTATGGGCCC

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K15430 TRM11, TRMT11; tRNA (guanine10-N2)-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5905 lncRNA upstream 274104 28104210 ~ 28105707 (+) True G4837
TU5870 lncRNA upstream 602152 27777290 ~ 27777659 (+) True G4808
TU5868 lncRNA upstream 603369 27721460 ~ 27776442 (+) True G4806
TU5865 lncRNA upstream 795777 27583571 ~ 27584034 (+) True G4804
TU5845 lncRNA upstream 1097570 27282004 ~ 27282241 (+) True G4787
TU6005 lncRNA downstream 54692 28454433 ~ 28464850 (+) False AMCG00003990
TU6007 lncRNA downstream 67176 28466917 ~ 28468944 (+) True G4917
TU6014 lncRNA downstream 168443 28568184 ~ 28576934 (+) False AMCG00003991
TU6060 lncRNA downstream 264761 28664502 ~ 28664710 (+) False AMCG00003993
TU6083 lncRNA downstream 492943 28892684 ~ 28893031 (+) True G4981
AMCG00003989 mRNA upstream 638 28373146 ~ 28379173 (+) True AMCG00003989
AMCG00003985 mRNA upstream 9837 28354515 ~ 28369974 (+) True AMCG00003985
AMCG00003983 mRNA upstream 104423 28259696 ~ 28275388 (+) True AMCG00003983
AMCG00003982 mRNA upstream 281485 28098060 ~ 28098326 (+) True AMCG00003982
AMCG00003980 mRNA upstream 285209 28062555 ~ 28094602 (+) True AMCG00003980
AMCG00003990 mRNA downstream 54678 28454419 ~ 28465646 (+) True AMCG00003990
AMCG00003991 mRNA downstream 169084 28568825 ~ 28585674 (+) True AMCG00003991
AMCG00003992 mRNA downstream 188090 28587831 ~ 28591593 (+) True AMCG00003992
AMCG00003993 mRNA downstream 240433 28640174 ~ 28683981 (+) True AMCG00003993
AMCG00003994 mRNA downstream 290147 28689888 ~ 28698767 (+) True AMCG00003994
TU5898 other upstream 276600 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 312025 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 2584020 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 3695891 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 4666677 23710238 ~ 23713134 (+) False AMCG00003898
TU6431 other downstream 1871469 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 2488254 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 4730379 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 6453122 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 7352792 35752533 ~ 35766180 (+) True AMCG00004158

Expression Profile