RNA id: AMCG00003989


Basic Information

Item Value
RNA id AMCG00003989
length 3254
RNA type mRNA
GC content 0.40
exon number 6
gene id AMCG00003989
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28373146 ~ 28379173 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCGCCAGAGGCTGAGCGGAGACCATGGCAGCTACTGAGGGCGCCGCGCAGGCCGGCCCCAGTGCAGGGCCGGTGAAGAGCCGGGCTCAGGCGGACGGCTACGACAagacctgtatcttctgtaaaATTGCCAGCCAACAAACCGACACCGAGTTGGTGCATTTCGATGGAGATCTGGCatgttttaaagatataaaGCCAGGAGCTCCTCAGCACTACCTTGTTGTGCCCGTGAAACATGTTGGAAACTGCAGAAGCCTCACAAAGGATCATGTACCATTAGTGGAGAAGATGGTGGAGGTGGGAAAATCGGTGCTGCAGAAGAACAACATTACAGACCTCAGTGACGTCAGGCTGGGTTTCCACTGGCCCCCGTTTAGCTCTGTAAATCATCTGCACCTTCATGTGTTGGCACCTGCTAGTGAGATGGGTTTCATgtccaaaatattttacagaattgACTCGTACTGGTTCGTTACAGCTGAACAGCTCATCCAACGGCTTAATTCCCTCAGTGAAAGCAACTGAATCTGGGCTGAGCTCCACTACCTCATGTTATTTTGCACTTTGGAACGAGACCAGTAATATGTGTGTAAACAGCCTGAACAGGAAGGGTAACTCATTATATAGTTAAATCTGTAACCAATGTATTTACTAATCATTTTAAAGGGTACTTAATTTCAGACTctgtaataaacaaatataagaaATAGTAAACATCTCAATTTAGTTCCAAATGATTCCTTCTGTTGCAGTCTGctgtgaagattttttttaattttcaacaaattaaaaaaaagattaacttgtttacaattttattttaattcttgtgTGAACGCATGTGCTATACTATACAGTAATGATCCAGTTAATATGTTTCAGGAACTTTATATTACAGAACTCATGTGATTAACCTCCCTGCCTTTTAAACACTGCACTATGttggtgtaaaataaataaaaacaaattaaaaatatagtatttCCTAACAAATTGTATTGTGGAAATACGAATGAATGATTATACAGCCTAAACAGGGGAACCAGAGATACGTGCAGGTGTGTCCTGGGATGAATGAGGTGGAAAATGGGATCCTGTCACCATTGACTCCAATACAATGTAGACAAGCTTATGTGTCtgttaaaacagaaaagactCCAATATGTTGGTGAGTGGAAAAGGCATGGATTTACTCTTGCAATCTCCAGTAGGGTGAACTGACCCTGTCCTATGGGGTAGGAGATGTTTGTAACGCATTGTAATCTAATTTTTTGTTCATGGTATATATGACCGAGTAGCTAAAGGACTACAACAAATGCACGATTATCTGATCTTGACAGTAAATAAACTGATCTTGTTTTATTGCAGACCTCCTACTGGTGAACTATTTTGAATGATCtttcatatacaaatacattgtacaaCGTTACTGAATTTGTACTGAACTTACTAGTGTGTGGGATTGAGATCTGTAAAGTAATATATTCATTTGGAATTAAACATCTGTATTGATTCAAAAGCTGATTTATTGCTGGTGCTTTTCTCTTtacaactgttttgtttttttgttgcatatatacatgttattttgCATAACATACATATGAGttgaaacattttctgtaattggtataaatacaattcttacaaataacattgaaaatacctacaaaagtgtacaattgttttcttaaatctagtgacaaataattaaatcGTTTTTAGCAAAAATTGACATTATAACAGAGGTTAAACAATAGAAGTTATATAATATGTGATATAGCTTCTCTTCAGttcagttaaaatgttaattgaatgcACACGCATTACtaatgaatttatatatatcatatacactTCTATATATTAGCACCCCAATCATGAGCTTAggacatttttgtgtgtgtgtgtagacaaTATGAATAGGCTTGATCTTCTGTTGCAAACTACACAATTCtatgtgtttcttttcacagaAACGTCAACTTCACTGCAATAGCACAATTCAGATTAATCAATCacggttttgttttaaagtatacAATTATCTGTCATCGCTTAAATTATTGTGCCGTTACAGATCACTGTGTGGTTGTGACTAACAACATTATTGCATATTTCCAGCTGTCTCTCATTGTGGAAAATACCTCTGCATATTAGGTAAACGTTTCAGCACGGATCTTCTGGCACATACTCTTCTAATTGCACTAGCCACTTAgcctggattaaataaaaatgctgacTCCCTGCCAAATGCAAATTCCTCCAGTGTCACCTGATCCTGTGGCTGTGTTTGCCAGAGGCTTCCCGCATCCACCCTAATGTGGCCCTTTTTTAGGCTGACGTTATTTTGGAGAATAGCTGTTCTTTATAAAAACGACACTGTGGTGTTGAAAGCAAACCTGAGTGAACCTTCACCACCTCGCCCCTCTGCACGGAAGCAGTGCAATGCGGACGCGGTCGTCTCTTCCTTGCCAGAGCATCTCTCCCTCGAAGGCAACCAGCCCCTGCCTCCGCGCCCTCAGGAGGAGCCCCACCACTTTGTTGGAGATGGTCACATACCGCTCGAACAGCTTTCCAAACTCGACCACGGTGGCCCCGTCCTCTCGGCGCTCTCCAACGCTTTGGATGATCAGACACAGCTCCTGCACCTCTTTTCCAACGTGGCTGTGGGCATCCCGTCCCCTCCGCTCGGTCTCGGAGCCCTCTCTCGGCCTCCCGTATCCCTCCTGCCCTTTCTGGAAGTGCACTGTCATTGTCTTGTTGTTACTGAAGGGATTGTGTTTCTGGTACTCCGAGTGATCATTTGACCATCTCTGCCAGTTCTGGGTTAACCCTTCAACGGTGCTAACATGACTCGCATTTCTAAGGTTACCATGAACAGTGGCATCCTCTCTTTCCATGTTCGTTCTCTTGCTCCTGGTAATATAGCTACAGTGTATCTTCTAAAAATGCACCAGCATCCTCAGTGTCTTATTCAATTAATATAGTTGGAAACACTCCTTTCGTGATAAACAGCTGCATCCTATTGCATGTAGACGTTTCAATTCCATGTTCTACAGATGTGGAGATCTCTGGACTAAAACAACACATCTGGTTCTTTAAAGTTGAACAGGGTTGACAATGCATCTAAAATCAGAAGGCTCTCTCCTAACGTAATAGTTTGTATGCTTATTTAATGCCACCAAGTATCGAAGTATTAACTACACATTACAAACCAACGTTAATCTTAAAAAGGGTAGGTGAAACC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5905 lncRNA upstream 267439 28104210 ~ 28105707 (+) True G4837
TU5870 lncRNA upstream 595487 27777290 ~ 27777659 (+) True G4808
TU5868 lncRNA upstream 596704 27721460 ~ 27776442 (+) True G4806
TU5865 lncRNA upstream 789112 27583571 ~ 27584034 (+) True G4804
TU5845 lncRNA upstream 1090905 27282004 ~ 27282241 (+) True G4787
TU5991 lncRNA downstream 19690 28398863 ~ 28399688 (+) False AMCG00003988
TU6005 lncRNA downstream 75260 28454433 ~ 28464850 (+) False AMCG00003990
TU6007 lncRNA downstream 87744 28466917 ~ 28468944 (+) True G4917
TU6014 lncRNA downstream 189011 28568184 ~ 28576934 (+) False AMCG00003991
TU6060 lncRNA downstream 285329 28664502 ~ 28664710 (+) False AMCG00003993
AMCG00003985 mRNA upstream 3172 28354515 ~ 28369974 (+) True AMCG00003985
AMCG00003983 mRNA upstream 97758 28259696 ~ 28275388 (+) True AMCG00003983
AMCG00003982 mRNA upstream 274820 28098060 ~ 28098326 (+) True AMCG00003982
AMCG00003980 mRNA upstream 278544 28062555 ~ 28094602 (+) True AMCG00003980
AMCG00003973 mRNA upstream 866997 27492506 ~ 27506149 (+) True AMCG00003973
AMCG00003988 mRNA downstream 638 28379811 ~ 28399741 (+) True AMCG00003988
AMCG00003990 mRNA downstream 75246 28454419 ~ 28465646 (+) True AMCG00003990
AMCG00003991 mRNA downstream 189652 28568825 ~ 28585674 (+) True AMCG00003991
AMCG00003992 mRNA downstream 208658 28587831 ~ 28591593 (+) True AMCG00003992
AMCG00003993 mRNA downstream 261001 28640174 ~ 28683981 (+) True AMCG00003993
TU5898 other upstream 269935 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 305360 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 2577355 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 3689226 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 4660012 23710238 ~ 23713134 (+) False AMCG00003898
TU6431 other downstream 1892037 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 2508822 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 4750947 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 6473690 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 7373360 35752533 ~ 35766180 (+) True AMCG00004158

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_00775184_00778097.mRNA True 1147 mRNA 0.39 5 CI01000016 774658 ~ 778097 (-)