Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00003990 |
| length | 1417 |
| RNA type | mRNA |
| GC content | 0.38 |
| exon number | 3 |
| gene id | AMCG00003990 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030121.1 |
| NCBI id | CM030121.1 |
| chromosome length | 57050121 |
| location | 28454419 ~ 28465646 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0090304 | nucleic acid metabolic process | biological_process |
| GO:0006139 | nucleobase-containing compound metabolic process | biological_process |
| GO:0006725 | cellular aromatic compound metabolic process | biological_process |
| GO:1901360 | organic cyclic compound metabolic process | biological_process |
| GO:0046483 | heterocycle metabolic process | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU5991 | lncRNA | upstream | 54731 | 28398863 ~ 28399688 (+) | False | AMCG00003988 |
| TU5905 | lncRNA | upstream | 348712 | 28104210 ~ 28105707 (+) | True | G4837 |
| TU5870 | lncRNA | upstream | 676760 | 27777290 ~ 27777659 (+) | True | G4808 |
| TU5868 | lncRNA | upstream | 677977 | 27721460 ~ 27776442 (+) | True | G4806 |
| TU5865 | lncRNA | upstream | 870385 | 27583571 ~ 27584034 (+) | True | G4804 |
| TU6007 | lncRNA | downstream | 1271 | 28466917 ~ 28468944 (+) | True | G4917 |
| TU6014 | lncRNA | downstream | 102538 | 28568184 ~ 28576934 (+) | False | AMCG00003991 |
| TU6060 | lncRNA | downstream | 198856 | 28664502 ~ 28664710 (+) | False | AMCG00003993 |
| TU6083 | lncRNA | downstream | 427038 | 28892684 ~ 28893031 (+) | True | G4981 |
| TU6107 | lncRNA | downstream | 486907 | 28952553 ~ 28953065 (+) | True | G5005 |
| AMCG00003988 | mRNA | upstream | 54678 | 28379811 ~ 28399741 (+) | True | AMCG00003988 |
| AMCG00003989 | mRNA | upstream | 75246 | 28373146 ~ 28379173 (+) | True | AMCG00003989 |
| AMCG00003985 | mRNA | upstream | 84445 | 28354515 ~ 28369974 (+) | True | AMCG00003985 |
| AMCG00003983 | mRNA | upstream | 179031 | 28259696 ~ 28275388 (+) | True | AMCG00003983 |
| AMCG00003982 | mRNA | upstream | 356093 | 28098060 ~ 28098326 (+) | True | AMCG00003982 |
| AMCG00003991 | mRNA | downstream | 103179 | 28568825 ~ 28585674 (+) | True | AMCG00003991 |
| AMCG00003992 | mRNA | downstream | 122185 | 28587831 ~ 28591593 (+) | True | AMCG00003992 |
| AMCG00003993 | mRNA | downstream | 174528 | 28640174 ~ 28683981 (+) | True | AMCG00003993 |
| AMCG00003994 | mRNA | downstream | 224242 | 28689888 ~ 28698767 (+) | True | AMCG00003994 |
| AMCG00003998 | mRNA | downstream | 252136 | 28717782 ~ 28731033 (+) | True | AMCG00003998 |
| TU5898 | other | upstream | 351208 | 28062363 ~ 28103211 (+) | True | G4831 |
| TU5899 | other | upstream | 386633 | 28062674 ~ 28067786 (+) | False | G4831 |
| TU5497 | other | upstream | 2658628 | 25794052 ~ 25795791 (+) | False | AMCG00003930 |
| TU5311 | other | upstream | 3770499 | 24683400 ~ 24683920 (+) | True | G4360 |
| TU5028 | other | upstream | 4741285 | 23710238 ~ 23713134 (+) | False | AMCG00003898 |
| TU6431 | other | downstream | 1805564 | 30271210 ~ 30271524 (+) | True | G5245 |
| TU6554 | other | downstream | 2422349 | 30887995 ~ 30894827 (+) | True | AMCG00004056 |
| TU6919 | other | downstream | 4664474 | 33130120 ~ 33131186 (+) | True | G5642 |
| TU7209 | other | downstream | 6387217 | 34852863 ~ 34870320 (+) | True | AMCG00004138 |
| TU7437 | other | downstream | 7286887 | 35752533 ~ 35766180 (+) | True | AMCG00004158 |
