RNA id: AMCG00004008



Basic Information


Item Value
RNA id AMCG00004008
length 675
RNA type mRNA
GC content 0.44
exon number 6
gene id AMCG00004008
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 29305204 ~ 29321613 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GAACTACTGAAAGACCCATTGTATATTGGATTACGGCACAAAAGAATACAAGGCCAGGCCTACAATGACCTTTTGGATGAATTTATGCAGGCTGTGACTAACAGGTACAGTATGAACTGCCTGATTCAGTTTGAGGACTTTGCCAATTCAAATGCCTTCCGCCTCCTCAGCAAGTACCGCAACACATACTGCACCTTTAACGATGACATACAAGGAACTGCTGCTGTGGCTGTAGCTGGTCTTCTAGCAGCTCTTCGCATCACGAAGAACAAGCTGTCTGATCAAAAGATTTTATTCCAGGGAGCTGGTGAGGCTGCCATGGGTATCGCAGACCTAATCACTATGGCAATGGAGAAAGAAGGAATTCCCAAAGACCAGTGCCTTACAAAGATTTGGATGGTTGACTCAAAGGGCCTTATTGTCAAGggaAGAGACAGTTTGACTGAAGAAAAGCTTAGATTTGCTCAAAATCACCCTGAAATGAAGAACCTAGAGCAAATCATCAAAAAAATCAAGCCAACTGCAATAATAGGTGTTGCTGCAATACCAGGAGCTTTTACAGAGAGAATTATAAAAGACATGGCATCATTCAATGAGCGTCCCATCATTTTTGCTCTGAGTAATCCAACCAGCAAGGCTGAGTGCACGGCTGAGCAATGTTATCGCCTGACTGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU6107 lncRNA upstream 352139 28952553 ~ 28953065 (+) True G5005
TU6083 lncRNA upstream 412173 28892684 ~ 28893031 (+) True G4981
TU6060 lncRNA upstream 640494 28664502 ~ 28664710 (+) False AMCG00003993
TU6014 lncRNA upstream 728270 28568184 ~ 28576934 (+) False AMCG00003991
TU6007 lncRNA upstream 836260 28466917 ~ 28468944 (+) True G4917
TU6212 lncRNA downstream 32908 29354521 ~ 29361679 (+) True G5085
TU6230 lncRNA downstream 217600 29539213 ~ 29541316 (+) False AMCG00004011
TU6278 lncRNA downstream 362614 29684227 ~ 29685543 (+) True G5129
TU6294 lncRNA downstream 376054 29697667 ~ 29699224 (+) True G5141
TU6346 lncRNA downstream 787228 30108841 ~ 30109040 (+) True G5185
AMCG00004007 mRNA upstream 39964 29259960 ~ 29265240 (+) True AMCG00004007
AMCG00004009 mRNA upstream 120500 29142762 ~ 29184704 (+) True AMCG00004009
AMCG00004003 mRNA upstream 196800 29082093 ~ 29108404 (+) True AMCG00004003
AMCG00003999 mRNA upstream 553206 28731909 ~ 28751998 (+) True AMCG00003999
AMCG00003998 mRNA upstream 574171 28717782 ~ 28731033 (+) True AMCG00003998
AMCG00004010 mRNA downstream 58970 29380583 ~ 29391128 (+) True AMCG00004010
AMCG00004011 mRNA downstream 205801 29527414 ~ 29541358 (+) True AMCG00004011
AMCG00004016 mRNA downstream 239736 29561349 ~ 29564564 (+) True AMCG00004016
AMCG00004014 mRNA downstream 259489 29581102 ~ 29587151 (+) True AMCG00004014
AMCG00004017 mRNA downstream 269990 29591603 ~ 29598227 (+) True AMCG00004017
TU5898 other upstream 1201993 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 1237418 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 3509413 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 4621284 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 5592070 23710238 ~ 23713134 (+) False AMCG00003898
TU6431 other downstream 949597 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 1566382 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 3808507 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 5531250 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 6430920 35752533 ~ 35766180 (+) True AMCG00004158

Expression Profile