RNA id: AMCG00004011


Basic Information

Item Value
RNA id AMCG00004011
length 5878
RNA type mRNA
GC content 0.36
exon number 14
gene id AMCG00004011
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 29527414 ~ 29541358 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAAAACAGTAACTTCGTTTATAGAGACTGAGCAGCGCTGCCGAGAAGAGCACGACAACACGTTTACATAGTCTGCCTCGCCTGTTTGCGTGATGGCAGGAAACTTCTGGCAGAGCTCACATTATTTGCAGTGGATCCTTGACAAACAAGATTTGATGAAGGAGCGCCAGAAGGACTTGAAGTTTCTTACAGAAGAAGAGTACTGGAAATTGCAGATATTCTTTGCTAACGTGATTCAGGCCTTAGGAGAACATCTGAAGCTCAGGCAGCAGGTTATAGCCACAGCTACTGTGTACTTCAAGCGATTTTATGCCAGATACTCTCTTAAAAGTATAGATCCTGTTCTCATGGCTCCAACCTGTGTGTTCTTGGCATCCAAAGTAGAGGAATTTGGTGTTGTTTCAAATACCAGATTGATCTCAGCTGCTACATCTGTATtaaaaacTAGGTTTTCTTACGCTTTTCCAAAGGAGTTTCCCTACAGGATGAATCATATATTGGAATGTGAATTCTATCTGTTAGAACTAATGGATTGTTGTTTAATAGTCTACCATCCCTATAGACCTCTTCTTCAGTATGTACAAGACATGGGGCAAGAGGACATGTTGCTCCCTCTGGCATGGAGAATTATCCTTGAGATCATCAGAGTCATTCTGAAGCTATATGACCAATGGAAAAACTTTGATGACCGAAAAGAAATGGCTGCAGTTCTCAACAAAATGCCTAAACCAAAGCCTCCTCCAAACAGTGAGAGTGACCAGAGTTCCAATGGAAATCAAAACTCAACCTACAATCAATCCTAGGAACTGTGAAATTTGATGCAGCAGAATGTGTTTGAACCAGGGAGCAATACACACTTTATTCAGGAGTGAACAAGCTGGTGGCCCGTTGTATGGGCTATTCTTTCTTGGATGTATGACGCCATCTCCAACATGTCCACCGGACAATATTATGTATCTCAagttttattcataattttgtaGACTTATGAATTCATGGTAGGTCTTATTAGCCTACTAGCATAAGGCACTCTCTTAATGTGTGTGGCCTTGTTACGGCTAGTATGCTTGAAAAGGGGGAAACATGATGTACCAAAACTAAACTGCTGGGTACAATCGGTGGAAAATCAGCTGAAATTCATAAGAATCGAAAGACTTGTTTCGTGGTGTTGTTTACTTCCTTGAAGAGTTGCACCGCCTAAAGTTAATTCTGTGGATTTCTGAAAATTGAGTTATGATTCCAAGAAAACTTGAttggtaatataaatattttattggcaATTGGTGAGTAGGTTGTAATTTCTTTGCACACCACTGTTTTGCATTACTTTCAGCAATAGATTAATGTTATAGAGGGGTTTGTGGCTTTGGGGAAAACAAATGATTGTGTTTACAGATATTGGTGTGTGAAACTATGGACCTTTTTGTTAGATTTTCTGGGCATTAGTTCTTCATGTTATTTTGACAGTGGGTTTCTGAGTACAAGGTGAGATGTTGGAGAATGTTTCAACATAAATATCTGAAGTTAATTGGGGGGCACTGTTAGAATACTTACAGTTTGCCTCTTTTTTGGTTTTTCTGACCTGTGACACAAGATTGTACACCTAAATGATTTTGAACATCCTCagacaaaaatgtatatcttgGCATCGGCTAAGCCTATCATATACCACTGAAAGCCACCGTTTCAATTGGTGCTATTCggtacattattttctgtgtgtgtgtatgtgttgagTGTAAGGATTTCAGATTTTTGCAACAAGTGGATAATGTTTAGAAACAACTGTTAAACAGGAGTTACTACCTAATTGGGTATATGATGcattaaactaaatgttttgggCAAGCTAGTTCACACTTGATCATTAAAAGCAACAATTCAAGAAACCAAATGGAGCACCACACATAatgataatggaaaaaaaatactactttGTGATACCTCTGCTTTGAAAAGgattggatttaattttaattactgcAATTATAATTAAAGCACTATGAATATACatgcaatttgaaatatatattaagtaaCTTATTTTTCCCCAAATCACACTTTGGCTAAACACACAAGATTGTAATAGtcaattaattcaaaattacagtacaataaatcagtttttgttttattgaagaaTTGGTCTGTAACTCACTGTAAAGCTGGTCTATAGTTTGCTTTTCCAATTCTCTAGATACCGGTTGGATAATAGAAAGAAATGGCACAATATTTGCTTCACCAACATGATGgcttttatttacatgttaatgattttaaagTACAAAGAAAGGCAAGTCTAAATGACAGGAATGTTTGAAGGGATGTGTGGTTGATTTATAACTTGCTGTAGATCACAAATGAGAGCACTTAGGTGCTTAGAACGACCATCTCTGAGCAGCTTGTTATATATTGGCTTCAGCAATTAATTGTCTTTCTTTATATAAGTTGGCTTAATACCTGGTGTAAGTGCTGTAATCTGAAAAAAGTTCTGTTCATTCATTCCAAGGCAGTATTCATAACTTGTCATAATACCCTGGAAAAGGAGAAAGTCCAACAGTAATGTGCTATGTATACTTTGACTGTGTCAGTGTCTTTTAGGAGTTATTTTTAGTAAGGATGTGGGTACACTTCATTTGACTGTATTACGTGCTTGTGGGTTCCTTATCAACAGGGGCTATTTTATTCCATCCATCACCTACTGAAGCACTGGTAATAGATAAACAATGCTTGAATGCCTTAAGAGTAAGCTGCTGGTTTCAAAATGATAAAACTTGATCAATGTAGACTGTGAAAATGTCTAAAGTTGAACTGTAATGACTGTTGCTTCAGCAGTTCAATGTAGTTTAATATAGTTGCTGGATTTGgatatttctatattttgttaGCCAAGGACACATTCTAAACGGAAATGCAGCTGGAGGGGGAAAAATCCCTAAGGATCTTGTCACATAATTGTTCTTTGAATAAGTTAACATATTTCAATATCAGtgtcttgctttatttttatggtaGTAGTCCTTGCTCCTTTTATTGCATTATGTTCAATGATTTGTATTAGAACCTTTTGAAAAGTCTTCAGGTCAACAGACCTCGCTTCactgtttatttcattcatGCACTTGTTCAAGtaccactttttaaaaacaaattaaagtattacttGACGTGtaagttgttttttgtatggTTATTAGGGGAATGGAATTGAAATTGTGCTAACTGAATCGCCACATTTTCGAACAGTGCTTTCTCAAGTGTTACCTCCTCACTTCCTTGCAATGTAAATTTCAAGAATGGTTATGAACACCTTGATTAAAAATTCACCAGTTGTCTTTAAGTGCAGCTCTTTAGACAATATGATCTGCAATGTCAAGATCACTACATTACTACAAAGGGAACTTTCTctttagaaaaaatacagattaaagaGATTTACAAGTACACTTTACAATACTTGTATAGAAACAAAGGATATGTGAGCACATACATTTATCATGTATACATATAGGGTACTTGAGTGAAATCATAAATGTGATGTGATTGAGATTAAACTGGGACAAAAGTCAAGGAAACCATGGCTATAGAGGTTTTACTcgtgaaaaataatttacatttttcatttgcccCCCCTTTACTTTAAGGAACTAGTCACAAAATTGCAATAAAAACTGTCTGTTGGATACTGAGTACAGTGGCTGGAATGTTTTTGACTTCAGAGTTATCAAGGTTGCAGACAATATGTAGCTTTAATACGCAACATATGGTGAAATTGCATGATATTCGTACCATACCAGGAACGCACTGTTGATTGAATCTTCAAGCTTAGCTATTCATTTAAGCTTTTTGATCCACATCCTGTATGAATAGGACATATTTTACCTAATCTGTTGTGTAGACAATAGCTTTCTCCTGAGTTTCTGAGTGAAATGCCAACATAACCTCACGTGCACATGCGAGTGTGGTGTGTGAATATGGCTGGCATATTACAGACATTAGACTTTAGCCATGCATTATTTTTCAGCTCATTAGGAATATCCAAGAAAGTCTGGATTGCTTAGCTCTGACAGCTGTTTAAAAGTAAAGATTTTACTGAAAAGCATAAATGATATGATTGTCATGGAAGTAAATCCTGTTTAATAGAACACAACACAATGATCGTGGAAATGAACATtcaaagtataaaacaaaatatatagtttatgtatttatctcccccctccccctctctctatatatttatatatattacctTTTGCAGTAATCAAACAAAACTTTACTTTTGCTTACAATTTCCAGTATAACATTGAAAGCCTGAAAACTACGTATATTTTGAGCCTTCTCAAAATACTTAAGTGTTGtcaataactttatttttacagtaaagtTTCAAAATATTGCTTATGTACTCTTGATGTACAGTTATATggaaaaagtaacaaaatataatttgtatattaaagtataattattttcttaatcttttctGCATAATAGGATAtctgtttatttcaaaacaatacacaatgtACTAATGCATTTACATGTATATCTATAATAGTTTTCTGCACTGTAACCAACACATCTTGCACATGCACAGGTATGTGTTGACTACTGtgaataaagcaaaataacacattCCTTAATCTTTTGAAAATTTCCTGAAGGTATAAAAAAATTGCAACATGCCTgtgtttaaattgattattccacagacaaatacaaaaacaagcactTGTTGTTTTCTTAGTTGTTACTTGATTGTACTGATGCAAACTTCAGAAttcattaacatacatttttgtcaaACAAGCAATTTAATGAAGCTATGGCTTAATACGGGTAGCAAGAAAATTCCAACAATTGCTTAAAAATGATTTTCCAACACACAATTCCATAGTGATTAATCCTGACACATTCCTTCAGCTTCAAAAACCTAGCAACACCCATCACATTAAAAAAGGCAATATGTGTTATATTTAAAGTTCAGTTCaaaatttaaatgcaatctGTGGTTATTTGATTAAAGTAAAatctgtattaatattaatatcagaaataaaaccCATACTTTCCCTTACCATGCAATGTAAACAATACTTTTACAATCATTCGTTTTTTTCCTGGATGTTGTCTTTTGCTACAGCTAGCTGTATAAAAGTCATGTTGTTTCACTGAAGACAAATCTCTtcagtttttcttatttattaactCATTCCGCACCCATTCTTCCCAACCACCTGGaaaaaaagttgCTCACTTGGTGTATCCTAAAGACACAGCTGTTTCCAGAGCCTTTTTGCTTCTGACTCCAGCGAGGCAAGAGAAGATAATGTTGTCGGATTGTGATGGCATGTATGAACCATACTTCTCCTTGAATTCATCAGGGTCCAACTTTAGAGCTGCATCCACTTGACCCACTGGGACATTGATAGCGCCAGGGATCTGCCCATATTCTCTGAGCTCCCACGGTTCCCGGACATCAATCACCACAGCACTGGTCTTGTCTGCGAGCAACTGCTTCAACTTTTCATAAGAGACATCTGGGCTGGACTCGGAGACGGTGCTGTATCTGCGAGAGAGGCGCTGTCCCGCCCGGGTGCCTAGCAGGGACGAGGAAGTACTCCCGTACGGTAAAAGCACAGGCGATCTTCTGCTACTGCAAGCCCAGGAAAGCGCTGGTGTCACATTCCTGTACAACACAATGCAAGGAATGATTCCCTTTAGCCTTGAAGATGCCATTAGAGATATTTCCCAAAAATCCTACAGAGAAAAACTCGATATCCACATAAGGACTGCTCTTCTACTGGTCAAGAACGGAGTGTTGCATATGCGCTTGCGCAGAAAAACGAGCCTTAATCTGCTCAGTCGGGGTATG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0016591 RNA polymerase II, holoenzyme cellular_component
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K15161 CCNC, SSN8; cyclin-C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6212 lncRNA upstream 165735 29354521 ~ 29361679 (+) True G5085
TU6107 lncRNA upstream 574349 28952553 ~ 28953065 (+) True G5005
TU6083 lncRNA upstream 634383 28892684 ~ 28893031 (+) True G4981
TU6060 lncRNA upstream 862704 28664502 ~ 28664710 (+) False AMCG00003993
TU6014 lncRNA upstream 950480 28568184 ~ 28576934 (+) False AMCG00003991
TU6278 lncRNA downstream 142869 29684227 ~ 29685543 (+) True G5129
TU6294 lncRNA downstream 156309 29697667 ~ 29699224 (+) True G5141
TU6346 lncRNA downstream 567483 30108841 ~ 30109040 (+) True G5185
TU6352 lncRNA downstream 580737 30122095 ~ 30123181 (+) True G5191
TU6362 lncRNA downstream 604497 30145855 ~ 30146557 (+) True G5198
AMCG00004010 mRNA upstream 136286 29380583 ~ 29391128 (+) True AMCG00004010
AMCG00004008 mRNA upstream 205801 29305204 ~ 29321613 (+) True AMCG00004008
AMCG00004007 mRNA upstream 262174 29259960 ~ 29265240 (+) True AMCG00004007
AMCG00004009 mRNA upstream 342710 29142762 ~ 29184704 (+) True AMCG00004009
AMCG00004003 mRNA upstream 419010 29082093 ~ 29108404 (+) True AMCG00004003
AMCG00004016 mRNA downstream 19991 29561349 ~ 29564564 (+) True AMCG00004016
AMCG00004014 mRNA downstream 39744 29581102 ~ 29587151 (+) True AMCG00004014
AMCG00004017 mRNA downstream 50245 29591603 ~ 29598227 (+) True AMCG00004017
AMCG00004015 mRNA downstream 59203 29600561 ~ 29611530 (+) True AMCG00004015
AMCG00004012 mRNA downstream 71831 29613189 ~ 29626518 (+) True AMCG00004012
TU5898 other upstream 1424203 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 1459628 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 3731623 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 4843494 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 5814280 23710238 ~ 23713134 (+) False AMCG00003898
TU6431 other downstream 729852 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 1346637 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 3588762 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 5311505 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 6211175 35752533 ~ 35766180 (+) True AMCG00004158

Expression Profile