RNA id: AMCG00004012


Basic Information

Item Value
RNA id AMCG00004012
length 1900
RNA type mRNA
GC content 0.46
exon number 6
gene id AMCG00004012
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 29613189 ~ 29626518 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cgcgcaggcctgcgcacatctgcgctacacgagcGCGCCCACTGTTCTCCGTGTGGTGTGGACAGAATCAGTAACAGTCAATGACATCACCGTGTGCACGGCCATAGACAAAAGCCCGGAGCAGCTGCGCAAGGATGCTGTCCCCGCTGCAGAGACGAGGATCAAGCAAGATGTTGTCTTTTCGCATTTTCCAACTGAAATTACCCATCTTCGACCATTAAGACTCATGCAATCATCTTAATGAAGCCTAAAAAACCTAGTGCCGAGGAAGCAGGTGGCGAATCTGACAAAGCATGTACTGGGGTGTTGGTTTCGCCTCGTCCCGGTCTTGTGTGGTTGATCTGAGCAGGAATCAAAGCTTCTCCTTCGGACTGTGTGGCTCCGATGATCACTACTCGTTTTATGGGTACATCGTCACTTTCCCTCTGCAGGACTACAGCGGGATCATGTCGGGGCTGGGGTCAGATTCCTGGTGGAAGAAAACCCTGTATTTGACCGGGGGAGCCCTGCTCGCCGCTGCTGCCTACCTTCTCCATGAGCTGCTGGCAATCAGAAAGGAACAAGAAGTTGATTCAAAAGATGCAATTATTCTTCATCAATTCTCAAGGCCAAAGAATGGAGTTCCTAGTTTGTCACCATTTTGCTTAAAGATGGAAACATACCTTAGAATGGTGGATTTACCCTATCAGaATTATTTTGATGGAAAACTTTCTCCCCAAGGAAAGATGCCTTGGATTGAATACAACCACGAGAAAGTCTCAGGCACTGAGTTCATCATAGATTTCTTAGAGGATAAACTGGGAGTAAATTTAAATAAGAACTTGAACCCTCATGAAAAGGGAGTATCTAGAGCTGTGACTAAAATGGTTGAAGAGCACTTTTATTGGACCATTGCTTATTGTCAGTGGGTGGACAATCTGCAGGAGACCCAGAAGATGCTGTCTGTCACCGGGCCTCTCAGCGACCTCCTCAAGTGGATCCTCAGCCACCTGACCCGAGGCATCGTCAAGAGAGAGATGTACGGCCACGGCATCGGCCGCTTCTCCAAGGAGGAGATCTATGCGCTCATGGAGAAGGACATGCGAACACTAGCAACTATTTTAGGtgataagaaatatataatgggACCAAAACTTTCATCAGTAGATGCTACAGTGTTTGGACATCTAGCTCAAGCAATGTGGACACTACCTGGAACAAGGCCTGAGCAACTGATTAAGGGTGAGTTAATAAACCTAGCCATGTACTGTGAGAGAATAAGAAGAAAGTTCTGGCCTGAGTGGTGTGACGATTTTGACTTCATGTACGACGAGACCAGTGAGGAAAGCCTGACGCCGACGCAGCTCCACGAGTACGGCTTGTATTCACGGACTGAAACGTTCGAAGAGGAAGTGACAGAAAACAGCTTCTCCTGCTCCCACACGCCAGACACGGACTACACCGGCCACTCGCTCTTTGACTCTGACGTAGAAATGGAAGAGTTCACAGATCAGGAGCAGTTCAAATGTTAGTCCCTTAAACCCCGCAAGTAAGTAATCATATGTAGGCCCTCACACACACCTGCCTCTCCAGAATGAGCGCAGGAATACGTTGAAGAAATAAAGGCATGTCTGTCATAGTGAGACGCAGATAGGCAGAATACATTGATTAGCAGGTAGGATTGCAGGAAGCACACGGATGGAGCTCGGGAGTCCAGCTGGAGCATTTATCTCTCTTCTAAAAATCAGAAGACATGATCAACGAAGAACAACTGCTTGTGGGTAACTTTTAAACGtgtttcattaattcatttataatgTTAAGCATTATAAAAGGACCAATGACTTTCATTAGGATATCAGTGGTAAAGACATCTGACTTTTTTCACTGtggtatgtattttttttttttttcaggtgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6230 lncRNA upstream 71873 29539213 ~ 29541316 (+) False AMCG00004011
TU6212 lncRNA upstream 251510 29354521 ~ 29361679 (+) True G5085
TU6107 lncRNA upstream 660124 28952553 ~ 28953065 (+) True G5005
TU6083 lncRNA upstream 720158 28892684 ~ 28893031 (+) True G4981
TU6060 lncRNA upstream 948479 28664502 ~ 28664710 (+) False AMCG00003993
TU6278 lncRNA downstream 57709 29684227 ~ 29685543 (+) True G5129
TU6294 lncRNA downstream 71149 29697667 ~ 29699224 (+) True G5141
TU6346 lncRNA downstream 482323 30108841 ~ 30109040 (+) True G5185
TU6352 lncRNA downstream 495577 30122095 ~ 30123181 (+) True G5191
TU6362 lncRNA downstream 519337 30145855 ~ 30146557 (+) True G5198
AMCG00004015 mRNA upstream 1659 29600561 ~ 29611530 (+) True AMCG00004015
AMCG00004017 mRNA upstream 14962 29591603 ~ 29598227 (+) True AMCG00004017
AMCG00004014 mRNA upstream 26038 29581102 ~ 29587151 (+) True AMCG00004014
AMCG00004016 mRNA upstream 48625 29561349 ~ 29564564 (+) True AMCG00004016
AMCG00004011 mRNA upstream 71831 29527414 ~ 29541358 (+) True AMCG00004011
AMCG00004013 mRNA downstream 37285 29663803 ~ 29681594 (+) True AMCG00004013
AMCG00004023 mRNA downstream 357095 29983613 ~ 29998684 (+) True AMCG00004023
AMCG00004027 mRNA downstream 467784 30094302 ~ 30097720 (+) True AMCG00004027
AMCG00004024 mRNA downstream 484568 30111086 ~ 30114969 (+) True AMCG00004024
AMCG00004026 mRNA downstream 504718 30131236 ~ 30137944 (+) True AMCG00004026
TU5898 other upstream 1509978 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 1545403 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 3817398 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 4929269 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 5900055 23710238 ~ 23713134 (+) False AMCG00003898
TU6431 other downstream 644692 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 1261477 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 3503602 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 5226345 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 6126015 35752533 ~ 35766180 (+) True AMCG00004158

Expression Profile