RNA id: AMCG00004023


Basic Information

Item Value
RNA id AMCG00004023
length 1755
RNA type mRNA
GC content 0.53
exon number 10
gene id AMCG00004023
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 29983613 ~ 29998684 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGAACCTCCTCGCCTTTCCCTTCAGCGCGGCCCTGCGCACTGGGGTCAAAGACACGCGGAGAACTTTCAGCCAATGGGCGACGAGCTGCAGCGAGCGCGCATGCGTCACAGGCCTGGTTTGTGGCGCGGGAGAAAGCAAAACACAAGGAGCGCTTTCGGGTCGTTAGTGAAATGGAGGATGACTTCAGCCCGTCCCTCACCCCGCCCGTGTCGCCCTTCCTGGTGGACAGTGAGTGTGGGGTGACCGCTGTCCGGCCGCCGTGCTTCTGCTGCGGGTCCGAGCCGGCCAGGGACGATGGCAGACATTTCTCCGCAGATGGGTACATGACAAGGGGGGCCCTGAAGAGATTGTTATTAAAATTGGATCCCTCGCCAACTGACTATGAAACAGACACTGTGGACATGTTTGGCTTTCCCTGGGTGACAGAGACGGCATTGGTGGAGTCTGCCAAACTCCTCTTCAGCTTGCTCAAGCAGGCTTTACACAGATTGGAAACCCTGGTTCAGGCAAGCTCACATGACTTtgGGCAGGCCAGCAACTTTCATTTTGAAGCTGAGGAAATAAGGCAACATTGTGTGGCATTTATGCAGTATGTCAAAGTCTTCATTTCAAGGTATCTGGAATATTCCAAGGGTATTGATGATGGCCATCTGCACCCATATGAGGAGCTGGAAGTACAGCTGCCATCAGTACTACTGGAGGAGCTGCATGGCATTGTTCTGTACATTGGGCACCTGCGTGATCTGCCCAGCAACATCCAGGGGGCTTTTACTATAAACCACCAAGGAAAGttaTTCTCTCCATCCTGGCATTTGTTGCACCTTCATCTTGATATCCACTGGTCAGTCCTGGAAATTCTTCATTTGCTTGGAGAGAAGGTGATGGGTCAGGTAGTTTATGCACACCAGTTTATGAATTTAACTGGAGAGAACCTTACCAACATCAGCCTGTTTGAGGAGCACTGTACAAACCTTCTGTGTGACCTCATTGGCCTGGCCTTGAACAAGTACAATAAGaataATGCCTTTACCATCCCGTGGCTGGGGCTGAAGGGTCTGGGGAGTGTGAGCAAGACCCCCTTCTCTATGCTGGAGTTGGTGAAGAGCTGCTGCAGTGAAGAGCAGAGCCCCGAGCTCTACACGACCTCCAGCAGTTTCCAGATCTTCCTGCGCATCCTGGCGCTCCAGATGAGGAAAGATATGAATGGAACGCATCCATGGAAACAGATCAAAGGGAGGGTATACTCCAAGTTCCACCAGCGGAAGATGCAGGAGCTGAGTGAAGCAGGCCTCATGAACTTCCTGAGCCTGTTCTTGGTGCTGGCAGCCACAGCGGATGTAGAGGATGTGGTTAGCCGGGTTTGTGACCTGCTGGCCCTGCTGAGCCCCAGCTCCATTTCCACAGCTCAGAGGGCCCTCGTGTGGAGAGGCcagtttgcttttattctgcTGTACGAGGAGAAAGGACTGGATGTGGCTGTGCTGGCCGACCAGCTCTCCATGGCCTTCCAGCAGGTGGCCAAGGAGTTCTACCTGAAGACCACGGACCAAACCCGCAAGCTGACCCTTTGGACCCTTCTCTCCACCTATATTGAGGGGGTCCAGGAGGTATTTGAGACTAGCTCTTATCTCCACCTCTCTGAGGAGAAGCTACTCAACGAAGGCTTCAGTATGTTGTTACCAGCCTGTCGAGAGTCCGAGCTGCACACCACGCTTTTCTTCCTGCAGAGTGTGTTGGCGCAACTGAGGTAA

Function

GO:

id name namespace
GO:0044427 obsolete chromosomal part cellular_component
GO:0005657 replication fork cellular_component
GO:0005694 chromosome cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component

KEGG:

id description
ko03440 Homologous recombination

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6294 lncRNA upstream 284389 29697667 ~ 29699224 (+) True G5141
TU6278 lncRNA upstream 298070 29684227 ~ 29685543 (+) True G5129
TU6230 lncRNA upstream 442297 29539213 ~ 29541316 (+) False AMCG00004011
TU6212 lncRNA upstream 621934 29354521 ~ 29361679 (+) True G5085
TU6107 lncRNA upstream 1030548 28952553 ~ 28953065 (+) True G5005
TU6346 lncRNA downstream 110157 30108841 ~ 30109040 (+) True G5185
TU6352 lncRNA downstream 123411 30122095 ~ 30123181 (+) True G5191
TU6362 lncRNA downstream 147171 30145855 ~ 30146557 (+) True G5198
TU6434 lncRNA downstream 276424 30275108 ~ 30276282 (+) True G5248
TU6440 lncRNA downstream 298183 30296867 ~ 30307175 (+) True AMCG00004039
AMCG00004013 mRNA upstream 302019 29663803 ~ 29681594 (+) True AMCG00004013
AMCG00004012 mRNA upstream 357095 29613189 ~ 29626518 (+) True AMCG00004012
AMCG00004015 mRNA upstream 372083 29600561 ~ 29611530 (+) True AMCG00004015
AMCG00004017 mRNA upstream 385386 29591603 ~ 29598227 (+) True AMCG00004017
AMCG00004014 mRNA upstream 396462 29581102 ~ 29587151 (+) True AMCG00004014
AMCG00004027 mRNA downstream 95618 30094302 ~ 30097720 (+) True AMCG00004027
AMCG00004024 mRNA downstream 112402 30111086 ~ 30114969 (+) True AMCG00004024
AMCG00004026 mRNA downstream 132552 30131236 ~ 30137944 (+) True AMCG00004026
AMCG00004025 mRNA downstream 158678 30157362 ~ 30167872 (+) True AMCG00004025
AMCG00004029 mRNA downstream 202504 30201188 ~ 30202790 (+) True AMCG00004029
TU5898 other upstream 1880402 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 1915827 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 4187822 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 5299693 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 6270479 23710238 ~ 23713134 (+) False AMCG00003898
TU6431 other downstream 272526 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 889311 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 3131436 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 4854179 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 5753849 35752533 ~ 35766180 (+) True AMCG00004158

Expression Profile