RNA id: AMCG00004029


Basic Information

Item Value
RNA id AMCG00004029
length 369
RNA type mRNA
GC content 0.59
exon number 3
gene id AMCG00004029
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30201188 ~ 30202790 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGTCTGCTCAGCCGCAGCAGCCCGTCCTGACTGTGGAGCAGGCCAGAGtggtgctGAGTGAGGTGATCCAGGCTTTCTCGGTGCCAGAGAATGCAGCGCGCATGGAGGAGGCGCGGGAGAGCGCCTGCAATGACATGGGCAAGATGCTGCAGCTGGTTTTGCCCGTGGCCACGCAGATACAGCAGGAAGTCATCAAGGCCTACGGCTTCAACAATGAAGGAGAGGGTGTCCTGAAATTTGCCCGACTGGTGAAGATGTACGAGACTCAGGACCCCGAGATTGCTGCCCTGTCTGTCAAACTCAAGTCCCTCCTCCTCCCGCCTATGTCAGCCCCGCCCATGGGAGGAGGTGTCACAGCATCATAG

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6362 lncRNA upstream 54631 30145855 ~ 30146557 (+) True G5198
TU6352 lncRNA upstream 78007 30122095 ~ 30123181 (+) True G5191
TU6346 lncRNA upstream 92148 30108841 ~ 30109040 (+) True G5185
TU6294 lncRNA upstream 501964 29697667 ~ 29699224 (+) True G5141
TU6278 lncRNA upstream 515645 29684227 ~ 29685543 (+) True G5129
TU6434 lncRNA downstream 72318 30275108 ~ 30276282 (+) True G5248
TU6440 lncRNA downstream 94077 30296867 ~ 30307175 (+) True AMCG00004039
TU6458 lncRNA downstream 342497 30545287 ~ 30545525 (+) True G5271
TU6459 lncRNA downstream 350187 30552977 ~ 30553214 (+) True G5272
TU6489 lncRNA downstream 537774 30740564 ~ 30740873 (+) True G5291
AMCG00004025 mRNA upstream 33316 30157362 ~ 30167872 (+) True AMCG00004025
AMCG00004026 mRNA upstream 63244 30131236 ~ 30137944 (+) True AMCG00004026
AMCG00004024 mRNA upstream 86219 30111086 ~ 30114969 (+) True AMCG00004024
AMCG00004027 mRNA upstream 103468 30094302 ~ 30097720 (+) True AMCG00004027
AMCG00004023 mRNA upstream 202504 29983613 ~ 29998684 (+) True AMCG00004023
AMCG00004030 mRNA downstream 23843 30226633 ~ 30229627 (+) True AMCG00004030
AMCG00004037 mRNA downstream 51580 30254370 ~ 30255135 (+) True AMCG00004037
AMCG00004028 mRNA downstream 55682 30258472 ~ 30270198 (+) True AMCG00004028
AMCG00004039 mRNA downstream 100601 30303391 ~ 30307144 (+) False AMCG00004039
AMCG00004045 mRNA downstream 502350 30705140 ~ 30722327 (+) True AMCG00004045
TU5898 other upstream 2097977 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 2133402 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 4405397 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 5517268 24683400 ~ 24683920 (+) True G4360
TU5028 other upstream 6488054 23710238 ~ 23713134 (+) False AMCG00003898
TU6431 other downstream 68420 30271210 ~ 30271524 (+) True G5245
TU6554 other downstream 685205 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 2927330 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 4650073 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 5549743 35752533 ~ 35766180 (+) True AMCG00004158

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000051_05757566_05757955.mRNA True 503 mRNA 0.46 2 CI01000051 5757566 ~ 5758141 (+)