RNA id: AMCG00004050


Basic Information

Item Value
RNA id AMCG00004050
length 4575
RNA type mRNA
GC content 0.62
exon number 36
gene id AMCG00004050
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30782054 ~ 30802209 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGTCAACATCCTGGTCGTGGGAAAAAAAACGAAACGAGAaaagaaggaggaaaaacagacacccagagagagagagagagaccctgcAGCCGAATCAGCTTTCCCGAGAAAAACTCGAAGGCACAAAGCAGCCCCGCCTGTCCTCGCTGTCCCGGCTCGGTTCGGCTGACCGGCGCGCCATGTCCTGCTGCCTGCTGGAGTTCTGCCGGGTGCAGGAGCTGCGGGCGGTGCGGGACTTTCTGTTCCCCAGCCTGCGACCCGCCGCGGACCCCGCCGCCAACAGCAGGAGCAGCGCAGagaAGGAGGTGAGCTGGGACGATGTGGACTGGGGCTCGTGGGACGACCCCGATGCTGCTGAGAGTGCCCCTGCAGAGGAGGATGGTGCGTCTCAGAGCACCCCCTGGCTGCAGGAGTGCGCGGTGTCGCTGTCGCCCTGCTCTGACTTGATGGTGCTGACCCGTGGACAGAGGGCCGTCTTCCTGTCCGCGAAGTGGCGCACAGCTGACTCTGGGCAGGAGGAGATGACTCTTGCCGTGTCCTGGAGTGGAGCGCTGAGTGCAGAGGAGGGGGAGTCTGTGAGCAGCGTGATCTGCATTCCTCTGGCCAGTCAGAAGAGGAGTTCTACAGGCCGGCCTGACTGGACATGTATAGTGGTAGGCTTCACCTCAGGATACGTGCGCTTCTACACTGAGAGCGGGGTGCTGCTCCTGGCCCAGCTGCTCAATGAAGACACTGTGCTGCAGCTGAAGTGTAGGACCTATGAGATTCCTCGGCACCCCGGGGTCACGGAGCAGCACGAGGAGCTCAGCATCCTGTACCCAGCCGCTCTCGTCACCATCGATGGGTTCAGCCTCTTCCAGTCGCTCAGGGCCTGCAGGAACCAGGTGGCCCGAGcggcagcagcaggcAGTGACAGTGTGCAGCCGCCCCCGCTGGCCTACAAGAAGTGGGGCCTGCAGGACATGGACTCCATTGTGGACCACAGCAGCGTGGGTATAATGACTCTGTGTGCGTTTGACCAGATGAAGAACGCCTCTATCCTAGGGGGCTTCCACGCCACAGTGAAGGGCAGCCCCCCCGCCATGAGCCAGTACATCACCGTAGGAGGGGGACCCTACACTGGCTTCTACTATGCCATTGAGGGTAGCTCTCAGCCCTTGCTGTCCCACGTTGCGTTGGCGGTGGCCAGTAAACTAACATCAGCTCTGTTCAGCGCTGCCagTGGCTGGCTGGGTTGGAAGAACAAGCACGAGGAGGAGCCAGTGCAGAAACAGAAGCCCAAGGTGGAGCCAGCGACCCCACTGGCTGTCAGGTTCGGCCTCCCTGACTCCCGGCGGCACGGCGAGTCCATCTGTCTGTCGCCCTGCAGCACGCTGGCCGGAGTGACGGACGACTTCGGCAGAGTGACCCTGCTGGATGTGGGCAGAGGAGTGGCCATCCGCATGTGGAAAGGGTACCGTGATGCCCAGTTGGGCTGGGTGCAGGTGTGTGAGAGCCGGGGAGAGGCGGAGGCCGGGGGATCGCCTCAATTTCCACGGCGACATGCCCAATTCCTGGTGATCTATGCCCCCCGCCGGGGCATCCTGGAGGTGTGGGGCACCCAGCACGGGCCCCGAGTGGGGGCGTTCACTGTTGGCAAACACTGCAGgctGCTGTACCCAGGTTACAGGTTGATGGGGGTGAACAGTGTGACCAGCCAGGGCTGGCAGCTCCCCACACAGCAGGTGTATCTGCTGGACCCGGCCAGCAGGGCCATTCGCACCATCACCGTGCCCTTCCACCTGGCCCTCAGTGATAAGAAGAGTGAGCGGGCGCGGGACATGCACCTGCAGAAGAGACTCAACACCCTGCTGAGGAGCAGAGACATCCCAcctgAGACCCTGGAGACTGAGGCCAAGAGCATCCTGCTGGACATCAAGCACCCTGCCATCAGGAAACagGCACTGGAGTCCCTGATGTCCAGTAAGAACGCCTCGGTGTCCACTCTGACCGTCGTCACTGGCGCTCTATTGGACAGCCTGCAGGAGCAAGAGGCGGAGGCGGTGGACGAGGCACTCCTGCAGCTGTGCACCTCTCAGCTCAGCCTCCTGCAGCTCTACACCGACATCCAGACACTCAACGCACAGGGCGCTGAACAGGCCAACCCTGACAGCGACACTgtagAGCCAGGAGACGGTGAGATGGACAGTGATCTGGCCCGACTCCGGCCAATCCTGCAGCAGTACACAGAGCTGAACTCCCGGCCCTCCGTGTCGTTTGCTCAGGACCCCAGTGGCCCACTTCCTGTGCGCAGCTTCCTGAGTCAGTTGGAGTGTGAGGGGGGTGTGGTGCGGGCCGTCAGGGGGCCAGACAGTGATTGGACACAGCTGGGCAGCTTCCTGTtctggggctgtgtgtgtggggagagtGCCCCTCACAGGCTGTGTGAGAGACTGCAGGCCGCTGGCTTCAGCCCTCAGCAACTACTGTCTCTGTGCCTCAGTGTGTGGctgtcgagagagagagaggtgctgCGGACGCCGCAGGCTGAGTCTCGGCTGCACAGCCTGCTCACTGCCCTCAGCAACATGACAGgggtggtggaggaggagtgGGATCTGCAGTCTGTCTCCCCCTGGTGGCAGCAGGTGCGCACTGCATGCTCTCAGTCTGAGAGCTCTGGCGCTGCCCTGCTGGCTGGCTTGGTGGGGCACCGTGTGGCCAAGAGCTGCATCAACAGCCTGGCAAAGAAGAAGtTCGAGGCGGAGTGCCTGTCCGACTCGTGGGAGGCCGTGtctctggagctggagcagtgggCCGTGTGTCTCAGGCAGCTGGAGGACACGCTGGCCCTGCAGACGCTGCTGTCCCTGCCCTCGCCCCGCCCTCCCCCAGGGAGCACTTCCACTCGGGTCACCGTCAGGGCGCTGCTGGAGGCCGGCCGAGggGGGGTGGCGGACAGTGTCGCGAAGTGGGTGTTCAGACAGGACCTGCCCCCCGTGCTGCTGAGAGAGATCCTGCAGgcgaggggagagggggagagtcTGAGACAGCCCCCAGCAGAAGAggaaggagggaaggaggagggCGGAGAGCAGAAGCACCAGGAAGGCCAGGAATTCCAGAAAGCTGCAGgGCTGTTGCGCTCCGTGTGTCTGCGGTTCCCCTTCTCTCTGAGTGCTGACCTGCTGTCGGCGCAGTGCTGCTGGGAGTACGTGGTGCAGTGGAACAGAGACCCCGAGgaggGCCGGTTCCTGTCCTGGTCAGTGGAGCACCTTCGAATGATCTCTAACCCTCACACCCAGcacggcattGCGGTGATGATGTGGAGCACTTTCATCGTGAAGCGCTTCTCTGCAGCAGCCTTCCTCATGGAGAAGgtgGGCAAAGCACCAAAGGACCGACTATGCAGGCGGgatgTGGGGATGGGAGACGGGCCGTTGACGTCGTTCCTGGGCTCCTGCACCCAGGTGCTGCAGATCCTGATGGAGGCAGATGCGGGCCGCGACGAAGTGCCCCCCCCAGCGCTGAGTGTGGaggaggtgtgggggggtgtggaGGGCCCGAGCTCAATGCTGGAGCTGGCCCTGGAGCAGCGCTCGGTCCACTACCCCCTGGTCCAGCACCACGCCCTGCTGGCCGCACTGCTGTTCGCTGCCATGACCTTCAACATCCGCCCTGCGCGGCCCCTCGGGCTGTTCGACAGCAAGGGCAAGAATGCCTTCTTTAAAGACCTGACGTCCATCCAGCTGCTGCCCAGCGGAGACACCGACCCCGGACTGGTGTGTCTGAGGCAGGAGtTCCTGCTGAAGGTGATGAGTGGCTGGGTGCAGTCTCTGGTGGAGGTGGGAGAGGAGTATCCCCCCCCCAGTCCCCCTGGTGGGGAGCAGTGGTCCGCGCTAGTGCTAGAGCTGGCCCCCCCGCTGCAGGTGAACTCTGACCTCCTGAGGAGACACCTGGTGTGTGAGCTGTACAGCCAGGGCCTGGACCGCCGTGCAGAGGAGGTGATGTTGGAGGTGGAGGACCGGGAGGTTCTGGGCTCTCAGTTGCTGGTTCTGACAGGTCAGCGCCTATCCTACTCCCTGCTGCACACGCAGACCCGCGCCGGCATGGAGCTGCTGGCCAGACTGCCCCCTGTGCTGTGCACCTGGCTCAAAGCCATGGACCCCGTGGAGCTGCGCTGCCCCTCGGTGCCGCTGTCTCTCACCAGCCGCCTGGTCACCCGGCTGATCGAGATGCTGCCCGAGAGTCACGGCCAGTACAGCCTGGCCCTCCACCTGATGGAGGCTGTGGAGGCCCTGGACACCGAGCCCTGAGAGATGGAGGGCATAGgaatgagaagaagaagaagaagaagaagaagaagaagagaggagTAGAGTGTGACAGTGATGGGaagctgaggagagagagagctggggagACAATTATTGACAGCAGTCCTACATTATATACTCCTGTACCCTGAGGCCAACAGTCTGTGTGCGTTACCAACCCCTGTTCAGCACACACTCTCAACAGTATACTGTcccacacactgtacacagCACACACTCTCAACAGTATACTGTCCCACACACTGTGTACAGCACACA

Function

GO: NA

KEGG:

id description
K19937 RAB3GAP2; Rab3 GTPase-activating protein non-catalytic subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6495 lncRNA upstream 3784 30778047 ~ 30778270 (+) True G5297
TU6489 lncRNA upstream 41181 30740564 ~ 30740873 (+) True G5291
TU6459 lncRNA upstream 228840 30552977 ~ 30553214 (+) True G5272
TU6458 lncRNA upstream 236529 30545287 ~ 30545525 (+) True G5271
TU6440 lncRNA upstream 474879 30296867 ~ 30307175 (+) True AMCG00004039
TU6638 lncRNA downstream 190397 30992606 ~ 30992900 (+) True G5417
TU6715 lncRNA downstream 984125 31786334 ~ 31786883 (+) True G5482
TU6723 lncRNA downstream 1226795 32029004 ~ 32029301 (+) True G5490
TU6726 lncRNA downstream 1389111 32191320 ~ 32191542 (+) True G5493
TU6733 lncRNA downstream 1466539 32268748 ~ 32269071 (+) True G5499
AMCG00004045 mRNA upstream 59727 30705140 ~ 30722327 (+) True AMCG00004045
AMCG00004039 mRNA upstream 474910 30303391 ~ 30307144 (+) False AMCG00004039
AMCG00004028 mRNA upstream 511856 30258472 ~ 30270198 (+) True AMCG00004028
AMCG00004037 mRNA upstream 526919 30254370 ~ 30255135 (+) True AMCG00004037
AMCG00004030 mRNA upstream 552427 30226633 ~ 30229627 (+) True AMCG00004030
AMCG00004049 mRNA downstream 2882 30805091 ~ 30807233 (+) True AMCG00004049
AMCG00004051 mRNA downstream 40511 30842720 ~ 30849036 (+) True AMCG00004051
AMCG00004056 mRNA downstream 85823 30888032 ~ 30894824 (+) False AMCG00004056
AMCG00004059 mRNA downstream 94867 30897076 ~ 30913151 (+) True AMCG00004059
AMCG00004058 mRNA downstream 122579 30924788 ~ 30928491 (+) True AMCG00004058
TU6431 other upstream 510530 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 2678843 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 2714268 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 4986263 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 6098134 24683400 ~ 24683920 (+) True G4360
TU6554 other downstream 85786 30887995 ~ 30894827 (+) True AMCG00004056
TU6919 other downstream 2327911 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 4050654 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 4950324 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 5469983 36272192 ~ 36274930 (+) False AMCG00004167

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00023918 False 4920 mRNA 0.50 35 NC_007128.7 25610351 ~ 25630848 (-)