RNA id: AMCG00004056


Basic Information

Item Value
RNA id AMCG00004056
length 2271
RNA type mRNA
GC content 0.52
exon number 3
gene id AMCG00004056
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30887995 ~ 30894827 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATAGAAGCTGCAGGAACAGCTGAGCAGCAGacaacaacacagagagagagagagagagagagagagagagagagagagagagagagagagagagagacggaaaacaaaaggaaaagaagagagACTAACTGAGTGAGAGCGCAGCGGCTCATCGACCTACGGTGATTCGTCGCAGAGTCGAGGCAGGCCGGCGATTGACCGACTGACACGCACACGGAGACAGGCCGAGAGGAGTGTCCCAGAGTGGAGCTGAGCGCGATGGGGCGGATCTTCCTGGACCACATCGGCGGCACGCGTCTATTCTCCTGCGCCAACTGCGACACCATCCTGACCAACCGCTCCGAGCTCATCTCCACACGCTTCACCGGCGCCACCGGCCGCGCCTTCCTCTTCAACAAGGTGGTGAACCTGCAGTACAGCGAGGTGCAGGACCGCGTGATGCTGACGGGGAGACACATGGTGCGGGACGTCAGCTGCAAGAACTGCAACAGCAAGCTGGGCTGGATCTACGAGTTCGCCACGGAGGACAGCCAGCGCTACAAGGAGGGTCGTGTGATCCTGGAGCGGGCGCTTGTGCGCGAGAGCGAGGGCTTCGAGGAGCACGTGCCCTCGGACAACTCCTGAGCGCTGCCGGGCCGACGTGCGGTCGAGGCCGTGCTTCTCCATTTTGCAAAACAACTCTGCCCCTACGCCCCACCCCCACACCGCACaaaccacaacacacactcGCAGCTCAAGTGCCCCATTGAGAGCCTCCAACTCAGCTAACACCCCTGTTGACACCGCCTGCCCCCCAGCGCGTTCACTGACCAGCATTTCCTTGCGCCTCACCCCCACCATCTAGAGAGTCCGACTGACGCCGCTCTTCCTGACTCGCACGGtctcaccccccacccacacgTTAACACACAGTTCGCCAAAACccccacacactgcacacaccgCACACTTGTATGCAACAGAGATCAATTACATAACACATTTACACGagcacaaacacagaacacctgaaaacccacacacacccgcacacacacaccccgtgGCCATTCTAGAGCCCAGAGCCTGCAGCCTGCTAGTATCACAGCCCCTGAGGGACAGGGTAGGACGACTGTAGAGAGAGTAGGAGTGAGAGTGAGAAACGGGTGGTGGTGCAGATAGAGGCAGTTCAAGTGTGTGTCAAACCAGTTAAGAGTTTTGTGTGGCAGAGTGGGGTTTTAATAATGGAGAGTTGGTTCTTTTTATTTCcgttcttttatttttcccttgtctctgtctctcggtGTCCTAGACTGAGGAATGAGTgagtgctgtgctgctgtgatttCCTGCAGCGGGTGGGttactgtgtttctgtgctgggGTTTGCATGCACAAGTACCACATTGGCGAAGTCGTTTGAGATCTTAACAGACATGGTGTTGTAGTTCCAGACCGTCACCGGTACGGACTCTGCCACAGGTACATTGCTCTGCATGCGCCCACTGTGGTCTGTGTCGTCTCCTCCCGCTGTCCCTGTAGTTTTGCGGTGTGAGAAGCTTGTGTGTGCAGAAAGCGTTAGTGTAACATTTCCAAGGAACCGGCACAAAGGACAACCAGGGTCCGGCTAAGGAAGGATGGAGGGGTTAGTTTagttcatcattattattattgttatttcctgtttgttttttgtattaatctcAAATTTGAACATCCCTTTAATGTGAAGGCATTTAAAGAGAAACTGTTCattgaaatttaattttagCAGGACTGACTGATTAACTGACTGACATTTGCTGAAAGTCAGACCTGGTGAGTGAGTCGGTGTGATCTCTCTGTGACGGGTGGGAGGGTGTGAGAGTGTGAAGGCTGCCGTGTGCTGTGAGGGTGTGTATTCAGCTTCAAACCTCTCTCTCTTGGTGCACAGGCTGCAGACTCTGGGAAGCCCTGTGGCCCTCCTCCCTTTGACCAGCCCTGTCCCCTTGTGCCATTACCAGGTTTTTGAAGATTTAtgatgggggtgggggcggtCCTGTTTATTCCTGCAGGACACAGAACCAGTCCCTGCCCCCCTCAACCCATCACCTGTCCGATCACAACTCACCTTGCCTCTGCAATTGGCAGATTAGAAAAAGTGATTGTCATAATCTGGTGGTAATagtgtgattattattactattattattgctgtttttctttctttaatttgaggaaAGTGAGAATGTTTAGTCTTTGCTGAGTTTTTCTGTAGTGGCAGTTTATCAATAAAGTGATTTGTCTTGAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6495 lncRNA upstream 109762 30778047 ~ 30778270 (+) True G5297
TU6489 lncRNA upstream 147159 30740564 ~ 30740873 (+) True G5291
TU6459 lncRNA upstream 334818 30552977 ~ 30553214 (+) True G5272
TU6458 lncRNA upstream 342507 30545287 ~ 30545525 (+) True G5271
TU6440 lncRNA upstream 580857 30296867 ~ 30307175 (+) True AMCG00004039
TU6638 lncRNA downstream 97782 30992606 ~ 30992900 (+) True G5417
TU6715 lncRNA downstream 891510 31786334 ~ 31786883 (+) True G5482
TU6723 lncRNA downstream 1134180 32029004 ~ 32029301 (+) True G5490
TU6726 lncRNA downstream 1296496 32191320 ~ 32191542 (+) True G5493
TU6733 lncRNA downstream 1373924 32268748 ~ 32269071 (+) True G5499
AMCG00004051 mRNA upstream 38996 30842720 ~ 30849036 (+) True AMCG00004051
AMCG00004049 mRNA upstream 80799 30805091 ~ 30807233 (+) True AMCG00004049
AMCG00004050 mRNA upstream 85823 30782054 ~ 30802209 (+) True AMCG00004050
AMCG00004045 mRNA upstream 165705 30705140 ~ 30722327 (+) True AMCG00004045
AMCG00004039 mRNA upstream 580888 30303391 ~ 30307144 (+) False AMCG00004039
AMCG00004059 mRNA downstream 2252 30897076 ~ 30913151 (+) True AMCG00004059
AMCG00004058 mRNA downstream 29964 30924788 ~ 30928491 (+) True AMCG00004058
AMCG00004064 mRNA downstream 50648 30945472 ~ 30947477 (+) True AMCG00004064
AMCG00004057 mRNA downstream 66809 30961633 ~ 30969204 (+) True AMCG00004057
AMCG00004065 mRNA downstream 80152 30974976 ~ 30990100 (+) True AMCG00004065
TU6431 other upstream 616508 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 2784821 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 2820246 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 5092241 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 6204112 24683400 ~ 24683920 (+) True G4360
TU6919 other downstream 2235296 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 3958039 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 4857709 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 5377368 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 5879177 36774001 ~ 36774523 (+) True G6314

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035164 True 1132 mRNA 0.53 3 NC_007131.7 113949 ~ 116999 (-)
grasscarp (Ctenopharyngodon idella) TU141850 True 272 lncRNA 0.42 1 CI01000024 6693450 ~ 6693721 (-)
grasscarp (Ctenopharyngodon idella) CI01000135_00158065_00158568.mRNA True 1032 mRNA 0.45 2 CI01000135 157415 ~ 158568 (-)
rainbow trout (Oncorhynchus mykiss) TU793920 True 1521 TUCP 0.45 4 NC_048572.1 32214486 ~ 32217549 (-)
tiger barb (Puntius tetrazona) TU141850 False 1352 TUCP 0.48 3 NC_056711.1 22326710 ~ 22329260 (-)
mexican tetra (Astyanax mexicanus) TU302651 False 3378 TUCP 0.39 4 NC_035921.1 41065669 ~ 41073316 (+)