RNA id: TU6554


Basic Information

Item Value
RNA id TU6554
length 2311
RNA type TUCP
GC content 0.60
exon number 3
gene id AMCG00004056
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30887995 ~ 30894827 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGGGGGCGGGGCCTCAGCGCGGAGCGGATGTTGTTATAGAAGCTGCAGGAACAGCTGAGCAGCAGacaacaacacagagagagagagagagagagagagagagagagagagagagagagagagagagagagacggaaaacaaaaggaaaagaagagagACTAACTGAGTGAGAGCGCAGCGGCTCATCGACCTACGGTGATTCGTCGCAGAGTCGAGGCAGGCCGGCGATTGACCGACTGACACGCACACGGAGACAGGCCGAGAGGAGTGTCCCAGAGTGGAGCTGAGCGCGATGGGGCGGATCTTCCTGGACCACATCGGCGGCACGCGTCTATTCTCCTGCGCCAACTGCGACACCATCCTGACCAACCGCTCCGAGCTCATCTCCACACGCTTCACCGGCGCCACCGGCCGCGCCTTCCTCTTCAACAAGGTGGTGAACCTGCAGTACAGCGAGGTGCAGGACCGCGTGATGCTGACGGGGAGACACATGGTGCGGGACGTCAGCTGCAAGAACTGCAACAGCAAGCTGGGCTGGATCTACGAGTTCGCCACGGAGGACAGCCAGCGCTACAAGGAGGGTCGTGTGATCCTGGAGCGGGCGCTTGTGCGCGAGAGCGAGGGCTTCGAGGAGCACGTGCCCTCGGACAACTCCTGAGCGCTGCCGGGCCGACGTGCGGTCGAGGCCGTGCTTCTCCATTTTGCAAAACAACTCTGCCCCTACGCCCCACCCCCACACCGCACaaaccacaacacacactcGCAGCTCAAGTGCCCCATTGAGAGCCTCCAACTCAGCTAACACCCCTGTTGACACCGCCTGCCCCCCAGCGCGTTCACTGACCAGCATTTCCTTGCGCCTCACCCCCACCATCTAGAGAGTCCGACTGACGCCGCTCTTCCTGACTCGCACGGtctcaccccccacccacacgTTAACACACAGTTCGCCAAAACccccacacactgcacacaccgCACACTTGTATGCAACAGAGATCAATTACATAACACATTTACACGagcacaaacacagaacacctgaaaacccacacacacccgcacacacacaccccgtgGCCATTCTAGAGCCCAGAGCCTGCAGCCTGCTAGTATCACAGCCCCTGAGGGACAGGGTAGGACGACTGTAGAGAGAGTAGGAGTGAGAGTGAGAAACGGGTGGTGGTGCAGATAGAGGCAGTTCAAGTGTGTGTCAAACCAGTTAAGAGTTTTGTGTGGCAGAGTGGGGTTTTAATAATGGAGAGTTGGTTCTTTTTATTTCcgttcttttatttttcccttgtctctgtctctcggtGTCCTAGACTGAGGAATGAGTgagtgctgtgctgctgtgatttCCTGCAGCGGGTGGGttactgtgtttctgtgctgggGTTTGCATGCACAAGTACCACATTGGCGAAGTCGTTTGAGATCTTAACAGACATGGTGTTGTAGTTCCAGACCGTCACCGGTACGGACTCTGCCACAGGTACATTGCTCTGCATGCGCCCACTGTGGTCTGTGTCGTCTCCTCCCGCTGTCCCTGTAGTTTTGCGGTGTGAGAAGCTTGTGTGTGCAGAAAGCGTTAGTGTAACATTTCCAAGGAACCGGCACAAAGGACAACCAGGGTCCGGCTAAGGAAGGATGGAGGGGTTAGTTTagttcatcattattattattgttatttcctgtttgttttttgtattaatctcAAATTTGAACATCCCTTTAATGTGAAGGCATTTAAAGAGAAACTGTTCattgaaatttaattttagCAGGACTGACTGATTAACTGACTGACATTTGCTGAAAGTCAGACCTGGTGAGTGAGTCGGTGTGATCTCTCTGTGACGGGTGGGAGGGTGTGAGAGTGTGAAGGCTGCCGTGTGCTGTGAGGGTGTGTATTCAGCTTCAAACCTCTCTCTCTTGGTGCACAGGCTGCAGACTCTGGGAAGCCCTGTGGCCCTCCTCCCTTTGACCAGCCCTGTCCCCTTGTGCCATTACCAGGTTTTTGAAGATTTAtgatgggggtgggggcggtCCTGTTTATTCCTGCAGGACACAGAACCAGTCCCTGCCCCCCTCAACCCATCACCTGTCCGATCACAACTCACCTTGCCTCTGCAATTGGCAGATTAGAAAAAGTGATTGTCATAATCTGGTGGTAATagtgtgattattattactattattattgctgtttttctttctttaatttgaggaaAGTGAGAATGTTTAGTCTTTGCTGAGTTTTTCTGTAGTGGCAGTTTATCAATAAAGTGATTTGTCTTGAGTCCTt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6495 lncRNA upstream 109725 30778047 ~ 30778270 (+) True G5297
TU6489 lncRNA upstream 147122 30740564 ~ 30740873 (+) True G5291
TU6459 lncRNA upstream 334781 30552977 ~ 30553214 (+) True G5272
TU6458 lncRNA upstream 342470 30545287 ~ 30545525 (+) True G5271
TU6440 lncRNA upstream 580820 30296867 ~ 30307175 (+) True AMCG00004039
TU6638 lncRNA downstream 97779 30992606 ~ 30992900 (+) True G5417
TU6715 lncRNA downstream 891507 31786334 ~ 31786883 (+) True G5482
TU6723 lncRNA downstream 1134177 32029004 ~ 32029301 (+) True G5490
TU6726 lncRNA downstream 1296493 32191320 ~ 32191542 (+) True G5493
TU6733 lncRNA downstream 1373921 32268748 ~ 32269071 (+) True G5499
AMCG00004051 mRNA upstream 38959 30842720 ~ 30849036 (+) True AMCG00004051
AMCG00004049 mRNA upstream 80762 30805091 ~ 30807233 (+) True AMCG00004049
AMCG00004050 mRNA upstream 85786 30782054 ~ 30802209 (+) True AMCG00004050
AMCG00004045 mRNA upstream 165668 30705140 ~ 30722327 (+) True AMCG00004045
AMCG00004039 mRNA upstream 580851 30303391 ~ 30307144 (+) False AMCG00004039
AMCG00004059 mRNA downstream 2249 30897076 ~ 30913151 (+) True AMCG00004059
AMCG00004058 mRNA downstream 29961 30924788 ~ 30928491 (+) True AMCG00004058
AMCG00004064 mRNA downstream 50645 30945472 ~ 30947477 (+) True AMCG00004064
AMCG00004057 mRNA downstream 66806 30961633 ~ 30969204 (+) True AMCG00004057
AMCG00004065 mRNA downstream 80149 30974976 ~ 30990100 (+) True AMCG00004065
TU6431 other upstream 616471 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 2784784 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 2820209 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 5092204 25794052 ~ 25795791 (+) False AMCG00003930
TU5311 other upstream 6204075 24683400 ~ 24683920 (+) True G4360
TU6919 other downstream 2235293 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 3958036 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 4857706 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 5377365 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 5879174 36774001 ~ 36774523 (+) True G6314

Expression Profile