RNA id: AMCG00004066


Basic Information

Item Value
RNA id AMCG00004066
length 2224
RNA type mRNA
GC content 0.65
exon number 17
gene id AMCG00004066
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 31047145 ~ 31062709 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTTGGACCTTTCCCCCAGGCAGCAGCTCTTtagctctttctctctctggtcATATCTATTTTCATGGAGGACTCGCCGGACGCCTCTCCTATCCCTCTCAGTCCCAGCAACAGCTGTGAGCAGGAGATGACGCGGGAGGATGTGCGGGAGCTGTCCTCAGAGGGAGACTCTGCGCTGGGAAGAGCCAGCAGCCCGGTCCCTGGCTCGGACAGGCCTGTCGTACACCAGGTGGCCTCTGCACCCATGCCCTCAGACTGCGAATTCTCCTTCTTTGACCCGAACGAGCCGAAGTGCCGGGCCATCCTGCTGGACCCTCAGACCTCCGTGTCGGAGCTGTTTGCTGTGCTGCGCCAGTGGGTCCCCCAGGTCCAGCAGAACATCAGCCTGATTGGAAATGAGATTCTGAAGCGCGGGTGTGGAGTGAACGACCGCGATGGCCTGACTGACATGAGCCTGCTGCACTACACCTGCAAGGCGGGGGCCCCGGGGATaggagaCGCGGAGGTGGCAGCTAGCTTTGCGAGGCAGTTACTGTCTCTGGGGGCGGAGCCGGGGCTGCGCTCACGCTGGACCAACATGAGCCCCCTGCACTACGCTGCCTATTTTGACGTCCCTCCTCTGATCACCACTGTGCTGCTCGCCGCCCAGCCAGGGGAGGTGGACGTCACCTGCAGTGACTTTGACTTTGGCACGGCTCTGCACATCGCTGCCTCCAACCTGTGTGTGTCGGCCGTGCGCTGTCTGCTGCAGCATGGGGCCAACCCCGCCTTCAGGAATGAATGTGGCCAGTGCCCTGTGGACGTGGTGCCTGAGCCTCTGGACATGCCCCTGGAGATGGCGGACGCTGCTGCCCAGGCCAAGGAGTTGAGACAGCTGCTGAGGGAGGCACTGCCTCAACCCGCCTCCCTCCCGCTCCTCCCCTCACCCCGCCGCCCTCACAGGAGCCCCAGGACCAATCAAAACACCCCAGACTCCAGCTCCAGCCGGGGCCTGCTGGCATCACTGGGGCTGCGTCTGGGAGATAGGGTCATCATCGCTGGACAGAAGTGGGCTGGGGTGGAGCTGGAAGACCCCGAGGGGAAGAATGATGGCTCGGTCGGGGGGGTGCAGTACTTTACCTGCCGGCCCAAACACGGCATCTTCGCCCCCGTGTCAAAGGTCACCCGGGTCGGGGAGTGGCGCCGGACCATGGTGCGCAGCTCCACTCCACTGCGGGGGGGGCGGCCCGACCTGTCCCACATCACAGCCAGAGTCAACACAGgttCTCCTTCTTTTCTAGGCTCCAGtcgttcctcctcctcctcctctctggaTTCCAGACAGCCCTCCAGTGTCCGGCTCCGACCCTCACCACGGGCGCGCCCCCCTGCCCGCCCCAGGAGGGAGAGAGCCCCTAGCAGTGCCAAGGCAGCGGCCCCTGGTGCCCGCACGCCCGCTGGCCCCCGGATGCGAAGGCCCTCGGTGAGCAGCGCCGTGTCCgtaggggaggagggggaggtgcAGCTCGGCGAGCGTGTGCTGGTGGCGGGACAGAGGACCGGCCTGGTGCAGTTCTGTGGCAACACCAGCTTCGCCCCTGGCCTGTGGTTAGGGATCGAGCTGGACAAACCCAGTGGGAAAAACGATGGCTCTGTGGGGGGGGTACAGTACTTCAAATGTCCCCCCAAACACGGCGTCTTCGCCCCTCCCTCCAGGGTACAGCGGATCCATGGCTCCCTGGACTCTCTGACTGATCTCTCCTCTGCCCGGCTCAACCACTCCTTCCCAGGAATCCGGCGAAGCTTCAGCACGTCATCCACTCTCTCTGCTCACAGGGACCTCAGCCGGAGGAGCCCAGTCAACAGgtctCGGCCTGCCGGGCTGCGGCGCAGTTGGAGCACTGCAAGCGCGGGCAGCCCGGGGGTGGCCCACTTCTCTGGGACGCCCACGCCCTGGTCCTCAGACGGTGGCGTGAAACTGCACCTGGGCATGACTGTCCTGCTGAGCAGCGCCAATGAGATGGGCGTAGTGCGCTACCTGGGGCCGGCGGACTTCGCCCCCGGGCTGTGGGTCGGCCTGGAGCTGCGCGGCGCCAAGGGCAAGAACGACGGCTCGGTGGGCGAGCGGCGCTACTTCAGCTGCCGGCCGGGACATGGGGTCCTGCCTGAGTCCCGGAGTGCTCCTGTGAATTGGCCAACTCTAAAGCCTTGTCCCACGGGTCACTCAAGGATGGAGAAGTGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6638 lncRNA upstream 54245 30992606 ~ 30992900 (+) True G5417
TU6495 lncRNA upstream 268875 30778047 ~ 30778270 (+) True G5297
TU6489 lncRNA upstream 306272 30740564 ~ 30740873 (+) True G5291
TU6459 lncRNA upstream 493931 30552977 ~ 30553214 (+) True G5272
TU6458 lncRNA upstream 501620 30545287 ~ 30545525 (+) True G5271
TU6715 lncRNA downstream 723625 31786334 ~ 31786883 (+) True G5482
TU6723 lncRNA downstream 966295 32029004 ~ 32029301 (+) True G5490
TU6726 lncRNA downstream 1128611 32191320 ~ 32191542 (+) True G5493
TU6733 lncRNA downstream 1206039 32268748 ~ 32269071 (+) True G5499
TU6735 lncRNA downstream 1246796 32309505 ~ 32309912 (+) True G5501
AMCG00004067 mRNA upstream 7408 31030418 ~ 31039737 (+) True AMCG00004067
AMCG00004065 mRNA upstream 57045 30974976 ~ 30990100 (+) True AMCG00004065
AMCG00004057 mRNA upstream 77941 30961633 ~ 30969204 (+) True AMCG00004057
AMCG00004064 mRNA upstream 99668 30945472 ~ 30947477 (+) True AMCG00004064
AMCG00004058 mRNA upstream 118654 30924788 ~ 30928491 (+) True AMCG00004058
AMCG00004071 mRNA downstream 307673 31370382 ~ 31371158 (+) True AMCG00004071
AMCG00004078 mRNA downstream 1242782 32305491 ~ 32329172 (+) True AMCG00004078
AMCG00004075 mRNA downstream 1272683 32335392 ~ 32346595 (+) True AMCG00004075
AMCG00004079 mRNA downstream 1337837 32400546 ~ 32402338 (+) False AMCG00004079
AMCG00004080 mRNA downstream 1365750 32428459 ~ 32428913 (+) True AMCG00004080
TU6554 other upstream 152318 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 775621 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 2943934 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 2979359 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 5251354 25794052 ~ 25795791 (+) False AMCG00003930
TU6919 other downstream 2067411 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 3790154 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 4689824 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 5209483 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 5711292 36774001 ~ 36774523 (+) True G6314

Expression Profile