RNA id: AMCG00004081


Basic Information

Item Value
RNA id AMCG00004081
length 2335
RNA type mRNA
GC content 0.46
exon number 7
gene id AMCG00004081
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32499473 ~ 32529839 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACACAGCTCTGGACCCAGGGGAGGACGTGGCCCTCCTGTCTGTTAGTTTTGAGGATGCAGAGGCTACTCAGGTGTTCCCCAAACTCTACCTGTCCCCCAGCATCGAGCAGGTTCACCTGCTGCCACAGCCCCCAGCCCATTTGCCCAAGGTGCGGCAGTGTGCACTGAGCACAATCTGTAGAGTCAACTCGGGGGCTGTGGATCAGGGTGCACTGGGAGGATCCTCGGCTCTCCATATCCCAGCATTCCCCAGTGGAGGCTGCCTCATTGACTACGTGCCTCAGGTCTGCCAGTTGCTCACAAACAAGGTGCAGTATGTCATCCAGGGCTACCATAAGAGGAGGGAGTACATTGCTGCCTTCCTCAGTCACTTTGGGATGGGTGTTGTGGAGTATGATGCTGAGGGATTCACCAAGTTAACCCTGCTCCTCATGTGGAAGGATTACTGCTTCCTGGTTCATGTTGATCTGCCCCTGTACTTCCCCCGAGACCAGCCTACCCTCACCTTCCAGTCCGTCTACCACTTCACCAGCAGCGGGCAGCTCTACTCTCAGGTGCAGAAGTCCTACCCCTACAGCCCGCGTTGGGATGGCAACGAGATGGCCAAGAGAGCCAAGTAAGACTGCCGCCCACAGGCCCGTCCCCCATGCCCCCATTACATCACCTCAACCAGCGCAACACTGTACACTGTAGACAGCTGCTGTGTCCTGACaacacagggaaagacatggGCTTGTGTGCTTGTAAGTGCCTGTGAGTCTGTGTGCacgggtgtgtctgtgtgtgtgtgcgtgtatgcatgtgtgtgtctgtgacagaGTTGTAGCTTAGAGTGTGTATATAAACCACTAAGcaatgactttaaaaaaaaaaaaaaatgaagtgttcAACATTAAAGTCCACATTGGACCggttaatgtgttttgttttattatttttgatgatgatgatgatcttatatatgttttgtctttattgttaCTATAAATTCATCTAAATAGTTAACAATGCACAATTTAGTGGGGAGTTAGAATCATAAGAGATTAGACTGGGGTCTGCacaatctctctttttttttttttttttccccctctctcctggcACAATCATCTTTCAGGTTCTGTATGATATACCTCCGTAAGACTGTCCCATTTGTAGAAGCTTTAAAGGTGACATGCATGCTTATGAAGGTTGTTAGTTTCCATAGTTTTGATGaatgtacagtacaatatcCTCATGTCTGCTCTGTACAATTGTAGAATTTCTATTCCTGCAGACCCACATTGTTTTGCACAAGCTATTATTACCCTGTACTGCAGTTAGATACTTTGGGATCATGGATCAAGTTCAggtctatttaaaaacaaatcaggacCCTATTGTTAACGTTTGTTAATTGCCACATGCACAACCCAACTCTCTTAGGTCACAACCATTTTCTCCATTACAGTGAAACACATGAACCATAGGATAATGCCATGCAGATCCTAGCTTTGTAGAGAccaaacagcaacagcaagtgAGCAGAGATTTGCAAAGGACAATAGTTCCCCCCCCCAACATTCTCCTGAAAACGGCAAGAgttacatacaatacaataatattaatattgtgaaGCCCATAGCATGTATTCAGAAGAACGGCATTGCGTAACGACAGCGGACAACGAGAGACACACAAGTATTTTTGTGCCTATCGTGGTTTTtgttggggggcaggggggctcGTCATGCTTTGATAATCCAAAGTAAATAGATAACCCACATGCTTAATATTGTCCTCCACAAATTTAGTTCAGATCAGAATTTGGAGTATGTATGCTCTCTTGATGAACTACACTGAAGAGGTCTTCACTGAAAGATGACCTGCACTGATATGCCATTGGTAGCTGAAACAGGTCTTGCCGAATTGTGAGTGCCGATGCCACAGTGAACGCAGCTGTTGTGAACTGTGCCCGTGCCTGTGCAgccacataagaacataacatcATAACCGTGCCATAGAATAAGAGGCAACTTTGGATTTTTACACAGAGCCTAGAAATATGAAACTAGCTTTTAATTGAGGACAAGGACTGTGTGTTTATGCAGCTAAGCAGATgttgtcgtgtgtgtgtgtgtgtgtgtgcatgcatgcgtgtgtgtggggggagtgGTGTGTGCGTGCTTATTTCCATCATTAAGGATGAGGGTCATTGTCAGGGGTCTTGCTTGGCCTTTGGGCCAGCCCTGTGCTATATTTATTGTTCGTAATGCAGGAACTGTCATGTTTAATTGGGAACTAAAGGGTGAATGTAACTGGGGCATTTATTAGCATCAagtcttttaataaaat

Function

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0045739 positive regulation of DNA repair biological_process
GO:0006915 apoptotic process biological_process
GO:0031572 G2 DNA damage checkpoint biological_process
GO:0010212 response to ionizing radiation biological_process
GO:0070531 BRCA1-A complex cellular_component
GO:0070552 BRISC complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0031593 polyubiquitin modification-dependent protein binding molecular_function

KEGG:

id description
K12173 BRE, BRCC45; BRCA1-A complex subunit BRE

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6774 lncRNA upstream 97090 32400405 ~ 32402383 (+) True AMCG00004079
TU6773 lncRNA upstream 111938 32384435 ~ 32387535 (+) True G5529
TU6771 lncRNA upstream 115794 32383409 ~ 32383679 (+) True G5527
TU6760 lncRNA upstream 149370 32348390 ~ 32350103 (+) True G5522
TU6735 lncRNA upstream 189561 32309505 ~ 32309912 (+) True G5501
TU6819 lncRNA downstream 81994 32611833 ~ 32612051 (+) True G5569
TU6947 lncRNA downstream 908489 33438328 ~ 33445420 (+) True G5662
TU6968 lncRNA downstream 943197 33473036 ~ 33473330 (+) True G5680
TU6969 lncRNA downstream 945003 33474842 ~ 33475047 (+) True G5681
TU6976 lncRNA downstream 1036334 33566173 ~ 33567479 (+) True G5688
AMCG00004083 mRNA upstream 43627 32449407 ~ 32455846 (+) True AMCG00004083
AMCG00004080 mRNA upstream 70560 32428459 ~ 32428913 (+) True AMCG00004080
AMCG00004079 mRNA upstream 97135 32400546 ~ 32402338 (+) False AMCG00004079
AMCG00004075 mRNA upstream 152878 32335392 ~ 32346595 (+) True AMCG00004075
AMCG00004078 mRNA upstream 170301 32305491 ~ 32329172 (+) True AMCG00004078
AMCG00004082 mRNA downstream 29140 32558979 ~ 32559365 (+) True AMCG00004082
AMCG00004086 mRNA downstream 41740 32571579 ~ 32582699 (+) True AMCG00004086
AMCG00004084 mRNA downstream 53701 32583540 ~ 32596401 (+) True AMCG00004084
AMCG00004085 mRNA downstream 68614 32598453 ~ 32600592 (+) True AMCG00004085
AMCG00004087 mRNA downstream 198821 32728660 ~ 32774812 (+) True AMCG00004087
TU6554 other upstream 1604646 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 2227949 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 4396262 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 4431687 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 6703682 25794052 ~ 25795791 (+) False AMCG00003930
TU6919 other downstream 600281 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 2323024 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 3222694 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 3742353 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 4244162 36774001 ~ 36774523 (+) True G6314

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000189_00183881_00277704.mRNA True 1158 mRNA 0.50 11 CI01000189 183881 ~ 277704 (+)