RNA id: AMCG00004083



Basic Information


Item Value
RNA id AMCG00004083
length 327
RNA type mRNA
GC content 0.57
exon number 3
gene id AMCG00004083
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32449407 ~ 32455846 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGagtaattttcttttaaagCACCTACTGAGCTGGGACGCGGGTGATGCAGAGTGCCTCCTGCAGCTGGTGAAGGAGCTGATCCAACAGTACCACCAGTACCAGTGTGAGCGGCTGCGCGAGAGCTCCCGTCTGCTGTTTGAGTATGACAGCCTACTGGAGGACCCCAACTACAGCCGCAGCATGGAGATCTATGCTGGCCGCAAGAACAGCTGGACGGGGGAGTTCTCTGCGCGTTTCCTCCTGAAGCTCCCGGTGGACTTCAGCAACATCCCGGTCTATCTCCTGAAGGTAGGAGCGTCCCCTGCGCCGCGTGTCACAGCATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU6774 lncRNA upstream 47024 32400405 ~ 32402383 (+) True AMCG00004079
TU6773 lncRNA upstream 61872 32384435 ~ 32387535 (+) True G5529
TU6771 lncRNA upstream 65728 32383409 ~ 32383679 (+) True G5527
TU6760 lncRNA upstream 99304 32348390 ~ 32350103 (+) True G5522
TU6735 lncRNA upstream 139495 32309505 ~ 32309912 (+) True G5501
TU6819 lncRNA downstream 155987 32611833 ~ 32612051 (+) True G5569
TU6947 lncRNA downstream 982482 33438328 ~ 33445420 (+) True G5662
TU6968 lncRNA downstream 1017190 33473036 ~ 33473330 (+) True G5680
TU6969 lncRNA downstream 1018996 33474842 ~ 33475047 (+) True G5681
TU6976 lncRNA downstream 1110327 33566173 ~ 33567479 (+) True G5688
AMCG00004080 mRNA upstream 20494 32428459 ~ 32428913 (+) True AMCG00004080
AMCG00004079 mRNA upstream 47069 32400546 ~ 32402338 (+) False AMCG00004079
AMCG00004075 mRNA upstream 102812 32335392 ~ 32346595 (+) True AMCG00004075
AMCG00004078 mRNA upstream 120235 32305491 ~ 32329172 (+) True AMCG00004078
AMCG00004071 mRNA upstream 1078249 31370382 ~ 31371158 (+) True AMCG00004071
AMCG00004081 mRNA downstream 43627 32499473 ~ 32529839 (+) True AMCG00004081
AMCG00004082 mRNA downstream 103133 32558979 ~ 32559365 (+) True AMCG00004082
AMCG00004086 mRNA downstream 115733 32571579 ~ 32582699 (+) True AMCG00004086
AMCG00004084 mRNA downstream 127694 32583540 ~ 32596401 (+) True AMCG00004084
AMCG00004085 mRNA downstream 142607 32598453 ~ 32600592 (+) True AMCG00004085
TU6554 other upstream 1554580 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 2177883 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 4346196 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 4381621 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 6653616 25794052 ~ 25795791 (+) False AMCG00003930
TU6919 other downstream 674274 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 2397017 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 3296687 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 3816346 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 4318155 36774001 ~ 36774523 (+) True G6314

Expression Profile