RNA id: AMCG00004087


Basic Information

Item Value
RNA id AMCG00004087
length 1725
RNA type mRNA
GC content 0.55
exon number 14
gene id AMCG00004087
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32728660 ~ 32774812 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTTAAACAGACTATCCAGATCTTTGCCCGCGTCAAACCCACCAAGAAAGCCAGCGCGGTCTACTCTGTGGAAGATGATGAGCAAGGAGGCTGCAGCCTGGAGTTCCTGGTCCCCCGGGATCTGGCAGACGGGTTCGTCAATAACAAGAAGGAGAACTACAGGTTCAGGTTTCAAAAAGTTTTTGATCAAGGAGCCCAACAGGATGACATCTTTGAACACATTGCCAAGCCTGTGGCTGACAGTGTGTTGGCGGGGTACAACGGCACCATCTTTGCCTATGGCCAGACGGGCAGCGGGAAGACCTTCACCATCACAGGGGGGCCGGAGCGCTACAGCGACCGTGGCATCGTCCCCCGCACACTCTCCTACCTCTACCACAACTTCAGCATGGACACCAGTAAAGTGTACACCACCCACATTTCCTACCTGGAAATCTACAATGAGTGTGGCTATGACCTGCTGGACCCCAGACACGAGGTCACACGTTTGGAGGACTTGCCGAAAGTCACCATCATGGAAGATCCGGATCAGAACATTCATCTAAAGAATCTGTCAATCCAGAAGGTAGCCAATGAAGAACAGGCTCTCAACTTGCTTTTCCTGGGGGACACCAATCGCATGATTGATGAGACCCCGATGAACATTGCATCCACGCGCTCTCACTGCATCTTCACTGTGCACGTGACCAGTCGGGAGCCGGATTCCTCCACGGTGTGCCGCTCCAAACTGCACCTGGTGGACTTGGCTGGCTCTGAGCGCGTTGGCAAGACTGGGGTGGGAGGGCAACTCCTCACCGAAGCCAAGTACATCAACCTGTCCTTACACTACCTGGAGCAGGTGATCATCGCTCTGTCGGAGAAGAATCGCTCCCATATCCCATACCGCAACTCCATGATGACCTCGGTGCTGCGGGACAGCCTGGGCGGCAACTGCATGACCACCATGATCGCCACGGTGTCGGTGGAAAGGAGGAACCTTGACGAGTCCATCTCCACCTGTCGATTTGCACAGAGAGTGGCACTTATCAAGAATGAAGCCCTTCTCAACGAGGAGCTGGACACAGGACTGTTGATTGTGAAGTTGAAGAGGGAGATCCAGGCCCTGAGAGAGGAGCTGGCCATGGTGACCGGGGAGCAGAGGGCTGACCAGCTCACAGACGATGAGATCCACAAGCTGGATGAGCAGCTTCAGCTATTCCTGAAGGACCCAGAACCCGATGCCACCCTTGACCTGGGGGCCGACATGCGCAAGATCCGTCACTGCTTCCAACTGCTCAAGGTGATGGTGACCGAGAGGAGGTCCAGTCAGGGTGGAAGGGACCAGCAtccctctcccccacccctgGGAGACCAAGAGGACTTGGACAGACCCATGCCTGAGGAGCTGAGGAGACTGAGAGAGCTGCTCCagcagagagacaaagagatctcgATCCTAGTGACCATGctgaagaaagagaagaggagggTCCAGGATGTATCAGCCCAGCTGGCTGTCCTCTCCAATGGCGAGTTGCTTTCCCAGAGTTCCTTGCGTTCCTCGGGGGTGGAGCTCGCAGACAGGTCAGGGGGGTCACCCAGTCTGAGCCAGAGCAGGGGCAGCCTCTCCTCGGACAGCACTCCCCCCGAGCCGGTGCACAGATGGAGAGttgtaTCAAAAGTACAACAAAGGAAgaatatacaaaacattagCCTTTTTTCATGTCCACGTCTGAAGGTTTGA

Function

GO: NA

KEGG:

id description
K10397 KIF6_9; kinesin family member 6/9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6819 lncRNA upstream 116609 32611833 ~ 32612051 (+) True G5569
TU6774 lncRNA upstream 326277 32400405 ~ 32402383 (+) True AMCG00004079
TU6773 lncRNA upstream 341125 32384435 ~ 32387535 (+) True G5529
TU6771 lncRNA upstream 344981 32383409 ~ 32383679 (+) True G5527
TU6760 lncRNA upstream 378557 32348390 ~ 32350103 (+) True G5522
TU6947 lncRNA downstream 663516 33438328 ~ 33445420 (+) True G5662
TU6968 lncRNA downstream 698224 33473036 ~ 33473330 (+) True G5680
TU6969 lncRNA downstream 700030 33474842 ~ 33475047 (+) True G5681
TU6976 lncRNA downstream 791361 33566173 ~ 33567479 (+) True G5688
TU6999 lncRNA downstream 823080 33597892 ~ 33600011 (+) True G5707
AMCG00004085 mRNA upstream 128068 32598453 ~ 32600592 (+) True AMCG00004085
AMCG00004084 mRNA upstream 132259 32583540 ~ 32596401 (+) True AMCG00004084
AMCG00004086 mRNA upstream 145961 32571579 ~ 32582699 (+) True AMCG00004086
AMCG00004082 mRNA upstream 169295 32558979 ~ 32559365 (+) True AMCG00004082
AMCG00004081 mRNA upstream 198821 32499473 ~ 32529839 (+) True AMCG00004081
AMCG00004089 mRNA downstream 39931 32814743 ~ 32836681 (+) True AMCG00004089
AMCG00004088 mRNA downstream 64152 32838964 ~ 32844650 (+) True AMCG00004088
AMCG00004093 mRNA downstream 101998 32876810 ~ 32900670 (+) True AMCG00004093
AMCG00004092 mRNA downstream 162593 32937405 ~ 32946916 (+) True AMCG00004092
AMCG00004099 mRNA downstream 357543 33132355 ~ 33135491 (+) True AMCG00004099
TU6554 other upstream 1833833 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 2457136 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 4625449 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 4660874 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 6932869 25794052 ~ 25795791 (+) False AMCG00003930
TU6919 other downstream 355308 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 2078051 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 2977721 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 3497380 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 3999189 36774001 ~ 36774523 (+) True G6314

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) LOC118963006 True 1637 mRNA 0.55 1 NW_023494274.1 18236 ~ 19872 (-)