RNA id: AMCG00004089


Basic Information

Item Value
RNA id AMCG00004089
length 1596
RNA type mRNA
GC content 0.57
exon number 12
gene id AMCG00004089
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32814743 ~ 32836681 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGTATCTTTTTGTTGGTCTAAGGGTGGCAGACAGCACTGCAGACCTGGCTGAAGCTGACCCAGTGGAGGAGCAGCTTCGTCAGCAAAtcgaagaagaaaagaagagTTTTAAAGCTACCTTCAGCCGACTGAAGGGGCTGAAGACTGAGATTGAACACTTGCAGCTGCTGCTGAAGAGAGGCAAATTGAAGTTGCTGAAGGACTTTGAAGTGTGGTGGTCTGAGGAGGCGTCAAGGCTGCAGGAGCAAGGGTCAGAAGACTCAGCtgcaggtcagaggtcagggttGACCCGTCAGCAGGATGTTCCAGGAGCCCAGAGCAGTGGTCCCTTCATGAGGGAGCCCCTAGTAGCCAGAGCTGGCCCTGAGAGAGAGTCTTTATGGAGGGGAGACACAGGGACCTACACCTCTGCCCAAGATCTGAGaaactTTAAACCACATCTGCCTTCTGCATCTAGAGAGTCAGAGAACAGAAGCAATTTGGACAGCAGGACTTCTTCACAGTCATCAGAGCTGAGGGCTCTGGGCTCCTCCATCCCCCTGACTGGAGACGAGCAGGTTGACGCCGACATCCTGGGCTTCTACAGGGCCAGGCAGACGCTGATGCAGAAATTAGGTAAGCTTGTGTCCGGCATCCACTCCAGCCTGTCAGTCCGTCGGCCTTTGACAACTGCTAGCCTGAGGGCAGCCATTCTGCAGGTCCAGCTGTGCTCCTCTGGACTGGTCTTGCTCCACCAAGAGCAACCCTCCTCACCAGCAGCCAGCAGAGGAGCCCCACTCAGTGCTTCAGCCCAGTGGTGCATCCCCCTCGGAGGGGTCATGGCTCGCTTCCAGGTGGGCAGCATTCGAGTCAGCTGGACGGGCCTGCTGGTCCTCAGCTACTCCCTGTACCTGCTCATCGGCGCTACCATCTTCCAGATCCTGGAGAGAGCGGCAGAGAGCCAGAACCGGGACCATTTTCAGCTGGAGAAGCTCAAATTCCTCAAAAACTACAGCTGTCTGGATGGGCCGGCTCTGGAGAGGTTTGTGcagGTGATCCTGGATGCCTGGGAGAAGGGGGTGAATCCCTCAGGGAACTCCACCAACCCCAGCAACTGGGACTTCAGCAGCTCCTTCTTCTTCGCTGGCACCGTTATCACCACTATAGGCAAGTCTGACCCTCAAGCCCTTTGCTATGGGAACCTGTCCCCCAGCACGGTGTCTGGCCAGGTGTTCTGTGTGTTCTACGCCCTGTGTGGGATCCCACTCAACCTGGCCTTCCTCAACCAGCTGGGCAAGGGCCTGACTGCACACCTGGGTCGATTGGAGAGGAGCGTGCTCATCACTGGACAGCATGAGAGAGCCCCAGCAGATCTGCCAGCAGTCCACTGGACAGATCCAGAGAAGCACTACATCTCCATATACCGTAGCCTGGCTGGCGTATGGATCATCTTCGGCCTAGCCTGGCTGGCCTTGCTGTTTAACCTGGGTGCCGGCATGATGGAGCGGCTTTTTCAGCTGAAGCACATTGCCTGCCAGCCCCCACCAGAGGAGGGGGCACAGACCAAGCAAAGCAAGATCCGGGAGCAGAGAACCATCCAGCAGGCAATCTGA

Function

GO: NA

KEGG:

id description
K04924 KCNK16, K2P16.1; potassium channel subfamily K member 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6819 lncRNA upstream 202692 32611833 ~ 32612051 (+) True G5569
TU6774 lncRNA upstream 412360 32400405 ~ 32402383 (+) True AMCG00004079
TU6773 lncRNA upstream 427208 32384435 ~ 32387535 (+) True G5529
TU6771 lncRNA upstream 431064 32383409 ~ 32383679 (+) True G5527
TU6760 lncRNA upstream 464640 32348390 ~ 32350103 (+) True G5522
TU6947 lncRNA downstream 601647 33438328 ~ 33445420 (+) True G5662
TU6968 lncRNA downstream 636355 33473036 ~ 33473330 (+) True G5680
TU6969 lncRNA downstream 638161 33474842 ~ 33475047 (+) True G5681
TU6976 lncRNA downstream 729492 33566173 ~ 33567479 (+) True G5688
TU6999 lncRNA downstream 761211 33597892 ~ 33600011 (+) True G5707
AMCG00004087 mRNA upstream 39931 32728660 ~ 32774812 (+) True AMCG00004087
AMCG00004085 mRNA upstream 214151 32598453 ~ 32600592 (+) True AMCG00004085
AMCG00004084 mRNA upstream 218342 32583540 ~ 32596401 (+) True AMCG00004084
AMCG00004086 mRNA upstream 232044 32571579 ~ 32582699 (+) True AMCG00004086
AMCG00004082 mRNA upstream 255378 32558979 ~ 32559365 (+) True AMCG00004082
AMCG00004088 mRNA downstream 2283 32838964 ~ 32844650 (+) True AMCG00004088
AMCG00004093 mRNA downstream 40129 32876810 ~ 32900670 (+) True AMCG00004093
AMCG00004092 mRNA downstream 100724 32937405 ~ 32946916 (+) True AMCG00004092
AMCG00004099 mRNA downstream 295674 33132355 ~ 33135491 (+) True AMCG00004099
AMCG00004101 mRNA downstream 300955 33137636 ~ 33142538 (+) True AMCG00004101
TU6554 other upstream 1919916 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 2543219 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 4711532 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 4746957 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 7018952 25794052 ~ 25795791 (+) False AMCG00003930
TU6919 other downstream 293439 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 2016182 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 2915852 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 3435511 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 3937320 36774001 ~ 36774523 (+) True G6314

Expression Profile