RNA id: AMCG00004092


Basic Information

Item Value
RNA id AMCG00004092
length 5114
RNA type mRNA
GC content 0.42
exon number 6
gene id AMCG00004092
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32937405 ~ 32946916 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agagaaaagagaggaagagagaaaagggTGAGAGCGGTACGGCATCTGAGCGAGCCCGGTTTAGcagtattcattattattagtggcACACAGCTCCGTTTCCTTGCTTGCAGTTAGCAGTAGTGAAGTGTAGAGATGGTGGACAGTGTTTACAGGACCCGCTCTCTCGGGGTAGCTGCGGTCGGGCTGCCAGATCAGTACGCAGACGGGAAGGCAGCGAAAGTGTGGCAGCTGTACATCGGGGACACCCGGAGCAGGACTGACGAGTACAAGAGCTGGGTGCTGTCTCTGCTCCGCAAGCACGGCTGCCAGAGGGTGCTGGATGTAGCCTGCGGTACAGGGGTCGACTCCATCATGCTGGTGGAGGAGGGCTTCAAGTTGGTGAGCGTGGACGCCAGTGACAAGATGCTGAAGTACGCGCTGAAGGCCAGGTGGGACAGGAGGAAAGAGGCCGCCTTCGACCAGTGGGagATTGAAGAGGCTAACTGGCTTACATTACCAGACGACGTGCAGAAGCCAGGAGATGGGTTTGACGCAGTCATCTGCCTGGGAAACTCATTCGCCCACTTGCCAGATTTCAAAGGGGACCAGAGTGATATCAAGCTGGCGCTGACAAACATAGCCAGCATGGTGAAGCCTGGTGGGATCCTGATCATTGACCACCGGAATTACGACTACATCCTGAAAACAGGGAAAGCCCCTCAGGGAAAGAACATCTACTACAAGAGTGATCTGACTCAGGACATCTCCACATCAGTGCTGTGGGTGAACAGCAAGCCCCACATGATCACTCTGGACTATACCGTGCAGGTCCCCAAGCAGAAGGGAGCTGAGGAGACACCTGAGCTCAGtaagTTCCGCCTGTCCTACTACCCTCACCAGCTGGACAACTTCAAGGAGCTGCTGAGAGAGGCGTTCAGGGGGAAGTGTGAGCAGAGTGTGTTCGGCGACTTTAAGAGCTACGATCCCAGTACAGACCAGGCCCCTTGCTACTTCATCCACGTGGTCAAGAAGACCGCCTAGGCCCCAGCTGCATGACCTGCTGATGTTGAGATGAAGAGCtgctttctctccttctccccttctctctctcactctttttctctccttgtAATTTGGCCTCTCTAAAACTGCCTGGGTTCTTCAGTCACTCACTCTTTTCATTGGGGCTCAGGTTGATAACCAAGCGATTGCCCAGGCTGCctcttacttttttttcttactcCTCAGCTGGTCACTGGGGTAGGGTGTGGCCCCTGTAGAAGCTGGGCTTTAGCAGCTCAGTACTGTCAACACCACCGCCAGTTACACATTAAATAAGCGTGATTGCATGTGCATTAGATTGGTGGAGGAAGCCAGGCTGATTTCTGCAGATGTTTGTTGATGCAGTTATCAGGAGCTCAAGGCCATACATTTCCAAGAGGTTTCTTTTCCATCTGTCAGAGACAGTCTCATGACCTGGCCATGTTCATGAGAGATTGTGATAGCAACACGTTTATACCATCTGTttttgggttgttgtttttttaaatacattattatcttGCTTGTTACATattcttttatgttttgatgCCCCAAATCTATTCAGTTACTTCTGCTTTTGGTCCAGTACGATTTCAGATCTGAATGTTCTTTTTTGCTTCTTTAAAACAAGCTGCTCTGAGATCACTTGAGGGAGGAGCACTGTAGCGCTGTCTCTGTACTGTGCCATGCAGTTCTATTATTTTGGCTTCAGggtgagagaaacacagagttGGCCTTGTGGCGAAAATACTAACAAGACTAAGCACAGCTGAAAAGACCAGCACTTGGCAAAGTGTATTAGAGGGAACCGAGAATGGCTAATCTGAAAGGGGTTTAATTATGGTTGTAGAAAGATGAGAAATCCTTTGATGCATGCATATGAGTTCTTGAAGTGCCCTGCGGATCACTGATATCTGCATTTCCCCATGTCACATCCTCTTGTTCAGCCTTGATAAAAACACGCCACTCAGACCAGAGGATGGATCTGAATTTTACAAGATCCCAGTGTGTTAGCCTCTGCCGCGTGTCTTGGAAGTTTATTTCCTGCCTGAACTACAGTATATGAAAAGAGAATTTGCTAGTTAACAACCACCAAAGGTAATCGTGCCAGACACACGCAATAGGATATGTAATCGGTAAGAAATTAAAAGCAGATGATATAAATATCTCCCTTTAATTGTCACCGCATCGGCCCTATTCCCTAAGGGGTCGTGATTCTCCTCCCTGTGTGAAGGTCACTGGATGTGAGACTGAGTCTGGCTGGGGTTTGGCTTGGTAATCGCTAAGCAGCATTATATATTTGTCACTGTTTCAAAGACATGAATTAATTGCCAGGACTCTTGGGTTCAGTATACGTTTTTCCTCTTGTCAGCATTTaagtctttttaatttttgtttccaATTGAACGATTAACTATAACTCCCCGCTCCCTCCTTCCCAGTTTCTGCAACCaaagaaatatttcaaaattatggCACGAGATGAAACCGTTTCTTCCTCGATAATGTGCAGAACTCAGACGCGCTGCTCTGTGTATGCGTGATTATGTGTAACTTGGCCAGAAATCAGTGGCTGTAGCGGAAAACATTTTGTGAAGGGCACATCTTGAAGCTCAGATCATGAGTGAAGGATAAGTCCCTACAATAAACCTGTGTAGAAATAACTACTGATCATTTGAATGATGGTGACACAATTTACAAGGGTCCTTATACTCTGTTTCAGTAACACCAAAGAAAAAACCAACAGGAAGGAAATAGTgctagctttttttttgtttgtttgctttttttagtCGATAGCAGTCTCTGTGTACTTCGTTAGCCTGAACATTACTGACAGACAAAATACCTATGCAAACCTCTATGCAAGGAAGTACATAGCTGTTGCATGGATACTGTACTCTGTATGCTGATGCCAAAATGacaggaacaaaataataaaaaaaagattcgGCGTTCCGAGTGTGAGAAGATTTGCTGTCTTTCTGCAAATAATTATGCAGCATCACATCCAAATCCCTAATCTGCTCGAGCCTCAGTTCCTTCCCCAAAGTATTTTGTTGTCTTTGGATCCTGCCAGCTGTCGGCGCAGCTTTATTGTGAGCTTCCAAAGTATCGTTTTGCTTTATTGGTTCAGTTTTATTCCTGTGCCTTCTAATACAAAAGCTGCCACCattcaaatagaaaatatttttttccatgggGTCTTCTGTTGTTTCTGTTGCTTTATTCACTAAGGCATATTTCACTTTTTGACTGAAAATAATCTTATCTGGGAAGCTtgagaaaatatacaaatattgtgGATCTACAATCTCAATTGATGATGTTCATTAATCAATAAtccaatttcctttttttatttttacttctgaCACATACTGTGTAGGGAAGTGTCTTAATAtgtctaaaatacaaatacatgccacttttgtgatttatttgaaCTGTGATAATCTTGCATTTCATTAGTATTGTTTTCAATGTGATAAATCTGCATTTCGTTACATTTTACTCagtaagatttatttttgtttaatttttatttgtatgttttcagtaGCCTCATGAGACATTTCCCTGTTATCTTGTGTAAACTACTGTAGAAGTATAATTGTTAGGTATACTGTAAAATCAATATGGGTAATTACCATTTGACATTAGTACAAAAATGATGGGCATTTCTTTTGAGGTGAAAGTATTACTGTTGCCTGCTGTCTTTTCAAAGTTACTGTTCCTTTTTTCCAAACATATATCTCATATTCCAGCTTTTAAACATCATGAAAAAGATCTTCAGACTGTTGTGGCTCATACCAATGTTACTTATTGGAGTTTTACTCCTTTTATGAACATGTAGAAAACTGACCTATATTTGCAAGAATTGAAAggagtatttttcttttctatagCACCTCTTAACAGTCCCTAAACAAACCAATTATCCACTGAAATGCATCTGTCTTTGTGCTAATGCTAATGACTAGGGCTTAAATTGCACACTTCActtcagtatatagtgtgtttctgtgtccaGGGGCAGATGCATAGCTTAGCTTTCCTCTCtctaatttaactttaaaaggCAACATAtgttgttctgtgtttgttAAGTTCGTTAAGTTTTGTAAGTCCTCATGACAGTTGCAAGAAACATCCAAGTATGTCCTGTAAGCAGGCTGTGAGATAATGCAGTGTGAGAGGGTGTGACTGCTTACCTATTGTCCACCAGAATGATCACATCAAGATGTTGTGATAACATCTGCTTTAATGAGGATTACTACAGTACAAGTGGCAGAAGGTGCTTGAATAATTTAACTGGAAGTGACAGAAGATGTTACATGGCAGTGCAACAGTGTGGGTGGTTAAGTGAAACAGCCTCTCCATGTTTGTACATTAACCACGTTAGCTGCAAAAGACAATGTGGTTATTCAGTGAGGCATGTTCAGCTAAATTCCCAAAGGTTGTGTGGTTTTCTGCACTGTTTTATTCTCCAGATCCTCAGTGATTAATGATAAACTTCATTGTttgtctcagtcagtcagtgagtttCCACTGTTTTGTAATGACAAAGTCTGCCACTTACTACAAGCATTTCAAAATTTCCAAAGGTAGCATTGTTTGATGAATAACCAAATAATGTGGCATGAGTTACTCAGTGGATTGTATGACTTGGCATTCCAGCTATTGGGCAATACTGCCATCTGCTGGAATGggaatgtaatttttattttatttcagttatcaGCTGTTGAATATCAATTGTTTGGAGTCTGggataaaatcattttaatgaaaactatgTGATTTTGGggatatgtttcttttttcagcCATGCTGGGGGTGAACTGATTTGtcatatttgtttgaaatgtcttaataaactgtttacaatgtttagaatccatttcattaaaataatccaaTCATTTGACTGGGATACAAAGCATTGCTTAAAACTGGAGTCCCCTATTATTTCTTGTACATAGAAGGCAGTACAATCATTGTCTAATTTTCTGTGTTTAcccagtcagtgtgtgagcGCCCCCATGTGTGTGAATTACTGTTGCAAAATGTCTTCTGCAGTGCC

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0017174 glycine N-methyltransferase activity molecular_function

KEGG:

id description
K00552 GNMT; glycine N-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6819 lncRNA upstream 325354 32611833 ~ 32612051 (+) True G5569
TU6774 lncRNA upstream 535022 32400405 ~ 32402383 (+) True AMCG00004079
TU6773 lncRNA upstream 549870 32384435 ~ 32387535 (+) True G5529
TU6771 lncRNA upstream 553726 32383409 ~ 32383679 (+) True G5527
TU6760 lncRNA upstream 587302 32348390 ~ 32350103 (+) True G5522
TU6947 lncRNA downstream 491412 33438328 ~ 33445420 (+) True G5662
TU6968 lncRNA downstream 526120 33473036 ~ 33473330 (+) True G5680
TU6969 lncRNA downstream 527926 33474842 ~ 33475047 (+) True G5681
TU6976 lncRNA downstream 619257 33566173 ~ 33567479 (+) True G5688
TU6999 lncRNA downstream 650976 33597892 ~ 33600011 (+) True G5707
AMCG00004093 mRNA upstream 36735 32876810 ~ 32900670 (+) True AMCG00004093
AMCG00004088 mRNA upstream 92755 32838964 ~ 32844650 (+) True AMCG00004088
AMCG00004089 mRNA upstream 100724 32814743 ~ 32836681 (+) True AMCG00004089
AMCG00004087 mRNA upstream 162593 32728660 ~ 32774812 (+) True AMCG00004087
AMCG00004085 mRNA upstream 336813 32598453 ~ 32600592 (+) True AMCG00004085
AMCG00004099 mRNA downstream 185439 33132355 ~ 33135491 (+) True AMCG00004099
AMCG00004101 mRNA downstream 190720 33137636 ~ 33142538 (+) True AMCG00004101
AMCG00004100 mRNA downstream 294116 33241032 ~ 33247564 (+) True AMCG00004100
AMCG00004108 mRNA downstream 488834 33435750 ~ 33452672 (+) True AMCG00004108
AMCG00004109 mRNA downstream 614108 33561024 ~ 33565863 (+) True AMCG00004109
TU6554 other upstream 2042578 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 2665881 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 4834194 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 4869619 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 7141614 25794052 ~ 25795791 (+) False AMCG00003930
TU6919 other downstream 183204 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 1905947 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 2805617 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 3325276 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 3827085 36774001 ~ 36774523 (+) True G6314

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00024329 True 2564 mRNA 0.40 6 NC_007128.7 48920799 ~ 48936123 (-)
grasscarp (Ctenopharyngodon idella) CI01000311_00368494_00376259.mRNA True 823 mRNA 0.49 5 CI01000311 368494 ~ 376345 (-)