RNA id: AMCG00004093


Basic Information

Item Value
RNA id AMCG00004093
length 5311
RNA type mRNA
GC content 0.40
exon number 7
gene id AMCG00004093
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32876810 ~ 32900670 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGGACAAGGGTCCTTTGCTGACGTCAGCCATCATCTTTTACCTGTCTATCGGGGCGGCAATATTTCAGGTCCTGGAAGAGCCCAACTGGAAGGATGCTGTCAAAAACTATGAAAACCGGAAGGCACAGATACTTCAACAATATCCCTGTCTCACGAAAGGCGACTTGGACAGAATTTTGGAGAGGGGCACTGGCCAAGATCAACACAGCTGTGCCCTGTATGAAAATGATCAGAATGTGTTCAAGCAGCTGGTGTCCGGGATCCAGAGCAACTGCAGTTGGGTTTGGGGATTCTTCGTGGTGTCAGATGCTTCAGGACAGGGTGTCACCATCACAGGCAATAAGACCTTCAACAACTGGAACTGGCCCAACGCTGTCATTTTCTCTGCTACCGTCATAACCACTATAGGTTATGGAAACATTGCCCCCAAGACGTCTCCGGGCAGGGTCTTCTGCATCTTCTATGGGCTGTTTGGGGTCCCACTGTGTCTCACCTGGATCAGCGCCCTCGGCAAGTTTTTTGGAGGAAGAGCCAAACGCCTAGGTCAATTCTTAACCAAGAGAGGAGTCACCTTGAGGAAAGCACAGTTCACCTGCACTGCCATATTCCTGCTGTGGGGGGTGGTGGTACACCTTGTCATCCCACCCTTTGTGTTCATGAAGCTGGAGGGCTGGTCCTACATTGAGGGGCTGTACTTCTCCTTTTTGATTAAAAGGGTACACCCAGATGAAAACTACCCAGTCCTTTACCGCTACTTTGTGGAGCTCTGGATCTACTTGGGTCTGGCCTGGCTTTCGCTGTTCTTCAATTGGAAGGTACGCATGTTTGTGGAGGCACACAAAGCTCTAAAGAAGAGAAGGAAACGACGCAAAGAGTCATTGGAGGATGTTCATAACTACAAAGAGGACAAGAAGGCCCTGCGGCTGGAGCACACAGCCAATGATGTCAACATCTTCAACTTCCTCTCCAAGAAAGAGGAAGGTTATAATGACCTCATCAAGCAGATAGCACCTAAGAAAGTTGGAACGCCAGCTGCAACCAGTGGCCGCAGCAAAAGCTGCAGCGACCATGACAGCGTTCACAAAATCCTGAGGTTGGACCACTCCCCTCGCCAGTGCCGGAGGTACAGCTTCAGTGACAGGGTGATGTTCTCTAAAATGGGCTTCCTGAGGAAAGACGAGAATGGGGAGCTACTGACGAAcctgagagagaaggaggacaTGGAAATGCAGGATCTGTCCTATGAGAACCAGCTGGACAAGGACTGTGGAGAAGAGGGGCACAAGTGGGACTCCAAGGAGTACCAGGCGCTTATCTTCCAGAATGCTAACATCACCTTCATTGACGAGGAGAACCTGATGAATGATGACACAAAAACCAAGATCTCCACAGACGAGAACGCAGAGTCCGAGTCAGAGTCCAAGGAGGAGAGTACCTCGGAGACTGAGGAGTCTGTGTTTACCATAGACGGCTCTGACCGCTCGCTCTCCTATGAACGGCTGGTGGAGGAATACTCCAAAGTGGACAACATTGACGGCCTCAAGTGAGCTCATTGACCGTTTAAGTTTTAATCACTTATTCAGATTTTAGTTttcaatataacatttatactGACTTCAAGAAGAGCCAGTGTTTTCTTAAAGGAACCCTAGTATAAATCTTGCTTGTCATTGATGCAAGAAAATACTTCTATTGAATGGAAAAAACACTGAACTAGTGGCGTCGCAACTCCAGCACTTGTATTGCACAAAGTGTTTGAGATCAACATGCAGAAGGATCTTTTTCTTAATATGCCACTCGCCACTTTGGGCCAAGTTGAACAAAGCTTTCTGAATCCCATAAAAGACCATGTCTGTTCAGCATTGCTCCTATGCTAGTTGGTTATATGGACTGGATGATATAAAGAACTGGAATGGTTGATCAACAATCTTTTTATCCTCTTCCAAtctaaacattttgatttttttactTCTGTTGTCCAATGTCTTCCACTGAGTGTTCAAAAGCAGAAATGCTTAAGAGTGTTAAATCCAACATATCAAGCTTAATTGTGGACCTTTTGGAGAGGACAAGCCAAGTCGTCTGTAACTTACATGTAGGATTCGCCAAGAAAGCTTCTACAAATGGGAAATATCAGCCATGTTCCAGTGTCCAGATTTACTTTCACCATATTGGTGTTTTttgtcaaatgtaattttatgaaAGAATTGCTGTCCTTTTTGCTATAATGTGCAGGCCATTAATCTTTGCTGCACCCAAGCTTCTAGTCCAGTGTCTATCCAGTGGAACTCTTATTCCAACACTAGTCAGTGTATGAGACAATTAGTAATGGTAGTCCTCATTTTAAGGGGGACACATTCTAACATTCCCCACCATGTTCAATATGTCACCAATCTGCAGGCAGATTCTAGATCGTTCCAATTGTAATCTGTCTTTCAATGTAgagttgcattttattaatgtcCTGTGCCTCCTTTTAAATATTGActgctttgatttttttgtttttgttcttgttttcactCTATTTATAGACAAGTACCAGCAATTCCATATATGTTAAGATTTACATGTATGACCCCAAGGCTTGGCCTATTTTTGACAGTTTTAGAACCTTTGGCCTCATAAAATGCAGAGAAACAAACTAATGTTTTTAGAGGCTAGCGTCTTTGTGTGAATTTCCACAGGTGGATAAAAGTCTGACTTGCAATACTTTGGCATACAAAGCCATGCCAACTGTAAGAAGATGCAGAAGTCTCTCCTCCTtttgtaaaagctttttttttttaaatacaataacataaatctatttattaaataaaacctaataAATACTGTAGTTCTTTTAAATCCTTTCCAACACCCTCACCCCTTTCTCAAGATATGAAACCCATGATGAGATGTGCTAGCATATGGGTAACATTTGTTCAGTATAATACTGAGCTTTATACTTGCCCCCTCTGagacaggaaaataattaaacactggGAAGAATAAACCATGCCCTCTCATCTCTCTAAGTGTAGGGGTTTGCTTGACTTTGTCTCATGGTGGCTCCAATGAAGTCTGAAGGTCATGACTCATAAACAAacagttatttttcattcattgcCTTTCCCACAGCTCCTACAAAAAGTGTTGCagagttgttttatttttttccagtatttttccaagattttattttgtctttaaacCTTGCCAGGcaagatttagtttttgtttctaaacacAAGCTGTAGactgccataaaaaaaaaagccacataACTTGCCCACCTGAAGTATTCGAGGTGAAACAATTGTTGTATTGGTTGTGTTTTCCTAGCCCATGGCTGCAGAGTTAAGCTTTCAACTTAGTAAATGTGCCTTGTGAATGTTCAGGAGTTGATTTCAGTAGTTTTTCCTTGTCATGGTTTAATTCATAGAAAGCCAAGGTTGAGCAAACTGCCCCATTGCCCTTCAGCTTATCATGGggttatgttttgtgtttctccGCCCCCCCCTCAGAACAATGTTGAGTATTTTGGTAGACTGCCTCCTCCCCCCCATTGTCTTTTGTCATAAGTTAATAAGGTTTGCTTTGCTGTTGACATTCAGCTCTGCCTACGTGTCCTGGTGGTTTTCTCACTTGCTGCAGACGTGGGCTGGGCAGTTGGCAACCTTCTCCGAGAAACTAAGCACATGTACTTCTGAAGTGTACAGTCTAGTATAGGAGGAATGCTGTTCTGAAAACTAATATCATGGCCAATAATGCACACCTTAAAATGCTGTTTGCACATTATTTtggatgtttatttaattgtggtGCTTGCTTCTAGTAGATGTGATTCACTGttcagtctttatttttgtattctttttagCAAGTATTTCAGCAAGTGGCAGCCTAGTAAAATGGACCTTTAATTTAAGTGAGTATTTTTAACACGTTTTAATGTgaattgtaacattttattttgtcctcttttgtttgaacaaaaaagaaaaacaaaagttgaaatTTACTGGTATGTTTCCAGTGCTACACTTTTGAGTCATTTGTAGGGGTCTACTATTAACACAGGCACATATGATATGGTACTGATATGCAAGGTAATGTTGGTTTGTTGGAAATCAAAATTCTAAGTATCTCACAAGAACTTTAATACCTTTATTGATAAATGAATTATATCCTCTGTAAGAGGATTACATTTTGACACATCAATATGTAGTAATACAATTTTCAGTGTGAACGTTTTTCATGTAAAGCACTAGCATAAAAGTCTGGAACAAAAAGAGTTTGAAGGCATCTTGACTGGCTGGAACCGAGCCATGGGAGTGTctttaaaagtgaataaatCCCTTTAGGAATCAGGGCTCTTAGGGAGGTTTTCAGGCTCTAAAGCAAATAAGTCATGAATGTTAAGGAGAACTTTGGGAGTTGTggaatgggggaaaaaaataaaatgtatgtataagaccttcaaaaatgtattgcattccCAAGACCCCAATAAAAGTGAAGCACAGAGAACATTGCCAGTGCTCTGTTTGCATTTACAGCATCGGCATTGAAGGCCTCTTTGGGCTGTGAATAATCTAAGCCTGCTCTAAAGTTATAAGCAATGGCATGGATAAATCTGACTACTTTCTTGAAGCTTGTTCACAGAGGAAACGCACATGGTGCACCTCCAAGGTTATGACTAGCCAAAGTATCTTCTCCAATCCTGAACCATTTGGGGCCCTACTCACACATACTTATAGATAGTGATTATATTTAGGGAAATGGCTTAATAAGGACAGCCTACTAAGAGGCAAACTTACAAAACTGAGCCAaaggttttagatttttttttaattattattattttatttttttatcttctgGGTATTTGGAGTGATTTTTATAGTATTTAAATTAACCATTATGGATGGTCACATCCAAAATATGAATTATCACTGAGCTTCATTATACAGCAATGTCTTGAAGGGGATCTTCAGGGTGAAGGCATGTGTCCATTTCCCAAGGTATGGGGTCATGAAAGCAGAGATCAGGCTGACAGTTCATAGATTTGTATCTACTTGTACTCCCCCATTTTAAATCCATCTGGTCTTCAATGTTTGgtgcttttttattaaaatagaaattgtGATAATGCAATGTGATCTTCATTGAACATGTCTCACTCCATTTCTGTAAACCTTACTCCAGCataatgtttgtatatgtatatatgtgtcggtaaattatttatcattggaaaactgttttgtacagaacaaaTGAAATTGTCAAGTGtgcataatatatttgttttaaataaac

Function

GO: NA

KEGG:

id description
K04916 KCNK5, K2P5.1; potassium channel subfamily K member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6819 lncRNA upstream 264759 32611833 ~ 32612051 (+) True G5569
TU6774 lncRNA upstream 474427 32400405 ~ 32402383 (+) True AMCG00004079
TU6773 lncRNA upstream 489275 32384435 ~ 32387535 (+) True G5529
TU6771 lncRNA upstream 493131 32383409 ~ 32383679 (+) True G5527
TU6760 lncRNA upstream 526707 32348390 ~ 32350103 (+) True G5522
TU6947 lncRNA downstream 537658 33438328 ~ 33445420 (+) True G5662
TU6968 lncRNA downstream 572366 33473036 ~ 33473330 (+) True G5680
TU6969 lncRNA downstream 574172 33474842 ~ 33475047 (+) True G5681
TU6976 lncRNA downstream 665503 33566173 ~ 33567479 (+) True G5688
TU6999 lncRNA downstream 697222 33597892 ~ 33600011 (+) True G5707
AMCG00004088 mRNA upstream 32160 32838964 ~ 32844650 (+) True AMCG00004088
AMCG00004089 mRNA upstream 40129 32814743 ~ 32836681 (+) True AMCG00004089
AMCG00004087 mRNA upstream 101998 32728660 ~ 32774812 (+) True AMCG00004087
AMCG00004085 mRNA upstream 276218 32598453 ~ 32600592 (+) True AMCG00004085
AMCG00004084 mRNA upstream 280409 32583540 ~ 32596401 (+) True AMCG00004084
AMCG00004092 mRNA downstream 36735 32937405 ~ 32946916 (+) True AMCG00004092
AMCG00004099 mRNA downstream 231685 33132355 ~ 33135491 (+) True AMCG00004099
AMCG00004101 mRNA downstream 236966 33137636 ~ 33142538 (+) True AMCG00004101
AMCG00004100 mRNA downstream 340362 33241032 ~ 33247564 (+) True AMCG00004100
AMCG00004108 mRNA downstream 535080 33435750 ~ 33452672 (+) True AMCG00004108
TU6554 other upstream 1981983 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 2605286 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 4773599 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 4809024 28062674 ~ 28067786 (+) False G4831
TU5497 other upstream 7081019 25794052 ~ 25795791 (+) False AMCG00003930
TU6919 other downstream 229450 33130120 ~ 33131186 (+) True G5642
TU7209 other downstream 1952193 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 2851863 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 3371522 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 3873331 36774001 ~ 36774523 (+) True G6314

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU115514 True 4547 lncRNA 0.32 1 CM030131.1 19613241 ~ 19617787 (-)
tiger barb (Puntius tetrazona) TU115514 True 795 lncRNA 0.44 2 NC_056709.1 338836 ~ 339676 (+)
mexican tetra (Astyanax mexicanus) TU115514 True 485 lncRNA 0.47 3 NC_035905.1 34726545 ~ 34729144 (-)