RNA id: AMCG00004099


Basic Information

Item Value
RNA id AMCG00004099
length 2036
RNA type mRNA
GC content 0.45
exon number 3
gene id AMCG00004099
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33132355 ~ 33135491 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaacaacgaAGATTTAGGCCACAGTAGGGTGAAGTTCATTCGTAATAACATTtgatatatgtaaatacattatacaactatatttatttatataacacctatataaaatatataggttGTGTCTGTCCACCCCTTAGGTTGCAGATACAAGTCTTGTGTCTAGGTGAAAAAGACCAAAATAAGCTCTAAAATCAAGTAAACCCGAAGCAACCGTCGTCCATCTTGGTGAAGCGGCGCAGTCAGTACCTGAAGGAGAATATGCCCACGAGTTGCGCAGCATACGGCTGTACCAACATCAGGACCAGGCGCTGCGGAGTGAGCTTTCACAGGTTCCCGTTAAACAAGGAGAGGAGAGCTGCGTGGATCCGACGCGTGCGCAGAGTGGATTTCGTCCCCTCTCTCTACACCTTCCTCTGCTCGGACCATTTCGAGGCGTCCTGCTTCGACCGGACGGGCCAGACTGTCAGACTGAGAGAGGATGCCGTGCCTACGATCTTTAACTTCCCGgggcaaaaacataaaatgGTATCCAGTCCTCGAGAGACGGCCACCAGCCAGAAAGCAATGGCCCCCATTGAGGCCTCCACCCCGGCTTCCCCAGGGCAGCCTGTGCGCAGCCCTGATGTCTATGAAGACCACAGCTACTGTCTGGTCAGCCTCTCAGCTGCCAAGGAGAAGATCTTAGACCTGAAGGAGCAGCTGGAGGCAGCCAGAAAGAAGCTGAAAGCCAGCCAGCAGCGGGAGAGGCGGCTGGGCATGCGCTGGGCAGAGATGAAAGAGTTGGTGTCTTGCCTGAAGAGGAAGAAACTCATCCCATCAGGGCCACCCTTGGAAGTCATAGAGAGCACCTTGAGCAGCATGGATTTAAAAGTCCTGATGAAGGAGATGAAGGCTCAATCCAGGAGTGCTTACCACCGGTATTATAGCTTCGAGTCCATGCATTTCTGCCTGACATTGCACTTCCATGCCCCAGAGGCCTACAAGTATGTAGAGCAGCACCTTGACCTGCCCAGCCCCAGTGTGCTGAGAGAGTGGGCAGATACGGTCACTGAACCCCCTTTCACAGAGGAGGTGTTTGACTGGCTGAATGGCTACACCCTGCAGGGCATGGAGTTCTACCTGTGTGTCCATGGGGGGAAAATACAGGCTGACGAGGACTGGGACAGCTCCAATGAGGAGGACTTTGAAGCAGACAAGCCTCCTCAGAGTGCCCTGCAGGACTCCACTGCAAGTGAAGCTTTGGCATTGCTGCTGGTTGCTGTAAACGGAAACTTGAAGTTGCCCTTGGCATACGCCCTGAGCGCTGACTTATCAGGAAAGGCTTTAAAAGACTTAATTCACCTGTGCCTGGTGAAGCTCTATGACTTTGGGATCTCCATAAAGGAGATGACATTTGATGACATTTCTACTGACATCTTCAAAAGCAAAGTCCCCAAGGAAGAACTTTATACCTTACttttgaatttctttttttctcactCACGTGAAACTccactgtaaaatgtttacaaagtGTCCACAAGCTGTTTCTGAATTTTCACACACCATtgtgaaatacttatttatgtCTCTTAAACTTCAGATCAGGATAATATTGCTTTGGGAAAATTACTTTGTAAATTTAAGAGAACCTAAAAAATAACCTATTTTCAGTAGAGGAGGAGGAATGTTTCATATGTTCGGCTTTAATGTTAAACAGTTTAAGTTGTTgacaatttcagttttcaattcTCAGTTACaaattcttttaaatgtaatgttgaaTTAAGTCATACTGTATAATTATTAAGTTATACTCAATAGTGCATTATATCAGTATTTGATCAGGAGTGCTAGGATGTTGTTAAtgctgtttgcttgtttttcccacagagaaataaaaacaaagcttgTTGATTTTGCCTCCAGAGCAAtgattccccccacccccaccatctTTTCTATCCAATTATGTTAACCTCTTTATATCCTGTTTTGGAGACCAATTTGCTGTAACTGGACTtatctgtgaaaacaaaataaaacaaagtccCCA

Function

GO: NA

KEGG:

id description
K23204 THAP2; THAP domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU6819 lncRNA upstream 520304 32611833 ~ 32612051 (+) True G5569
TU6774 lncRNA upstream 729972 32400405 ~ 32402383 (+) True AMCG00004079
TU6773 lncRNA upstream 744820 32384435 ~ 32387535 (+) True G5529
TU6771 lncRNA upstream 748676 32383409 ~ 32383679 (+) True G5527
TU6760 lncRNA upstream 782252 32348390 ~ 32350103 (+) True G5522
TU6947 lncRNA downstream 302837 33438328 ~ 33445420 (+) True G5662
TU6968 lncRNA downstream 337545 33473036 ~ 33473330 (+) True G5680
TU6969 lncRNA downstream 339351 33474842 ~ 33475047 (+) True G5681
TU6976 lncRNA downstream 430682 33566173 ~ 33567479 (+) True G5688
TU6999 lncRNA downstream 462401 33597892 ~ 33600011 (+) True G5707
AMCG00004092 mRNA upstream 185439 32937405 ~ 32946916 (+) True AMCG00004092
AMCG00004093 mRNA upstream 231685 32876810 ~ 32900670 (+) True AMCG00004093
AMCG00004088 mRNA upstream 287705 32838964 ~ 32844650 (+) True AMCG00004088
AMCG00004089 mRNA upstream 295674 32814743 ~ 32836681 (+) True AMCG00004089
AMCG00004087 mRNA upstream 357543 32728660 ~ 32774812 (+) True AMCG00004087
AMCG00004101 mRNA downstream 2145 33137636 ~ 33142538 (+) True AMCG00004101
AMCG00004100 mRNA downstream 105541 33241032 ~ 33247564 (+) True AMCG00004100
AMCG00004108 mRNA downstream 300259 33435750 ~ 33452672 (+) True AMCG00004108
AMCG00004109 mRNA downstream 425533 33561024 ~ 33565863 (+) True AMCG00004109
AMCG00004110 mRNA downstream 612418 33747909 ~ 33761457 (+) True AMCG00004110
TU6919 other upstream 1169 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 2237528 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 2860831 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 5029144 28062363 ~ 28103211 (+) True G4831
TU5899 other upstream 5064569 28062674 ~ 28067786 (+) False G4831
TU7209 other downstream 1717372 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 2617042 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 3136701 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 3638510 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 3726056 36861547 ~ 36891746 (+) True G6328

Expression Profile