RNA id: AMCG00004128


Basic Information

Item Value
RNA id AMCG00004128
length 1419
RNA type mRNA
GC content 0.51
exon number 12
gene id AMCG00004128
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 34820168 ~ 34834115 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCACCAGGACAACAGACTCTCTCTGTGTAGTAAACTATGCTTTGCCATCGGAGGCGCTCCCAACCAGGTAGCAGGAAGTGCTACAGCGTTTTTCCTGCAGATCTATCTACTTGATGTTGCCCGAATTAATCCATTCCAGGCTTCACTAGTGCTGTTCATTGGAAAGGCATGGGGAGCAATAACAGATCCTGTCGTCGGCTTCTTTATCAGCAAAAGCAAATGGACCAGGATTGGGAGGCTTATGCCTTGGATGGTGGGCTGCACTCCTTTCGTGGTGGTGTCCTATTTCTACCTGTGGTACGTTCCGCCCTTCTCTACAGGAAGATTCGTATGGTATCTGGGATTCTACTGTCTTTACCAGACCCTTATCACATGCTTCCATGTGCCTTACTCAGCCCTCACCATGTTCCTCAGCACGGACCAGAAGGAGAGAGACTCAGCCACTGCCTACAGAATGACCATGGAGGTTCTGGGGACACTAATTGGAGCTGCCATCCAAGGGCAAATAGTGGCAAGTGCCCACACCTCCAAACACTGCCCACTGTACAATGCCTCTACAAACCGGCCTGGCAACAGCAGTCACCCATCCCAGAGTGAGCAAGCCACCAGCAACCCTGCCCTCACCCAGGACTTCCTTTCACATGCTAAAGAAGTGTATATGATCGCAGCAGGTGTGATCGGAGCCCTCTTCCTGCTGTGTACAGTGGTGCTGTTCCTcggagtgaaggagagagacGATCCCTATGCACTGAAGTCAGACAAGCCAATTCCATTTTGTAAAGGATTCAGACTGGTAATGAAGCACGAACCATACCTTAAACTGACAGCAGCATTCCTCTTCATATCTGTGGCTATCCAGATGTCTGCAGTTGTGAGTATCCCATTATGGCAGTGGTTCCTGCAGAGGTTTGGCAAGAAGACAGCAGCATACTGTGGCATTTCATGGATAATTCCATTCACCATCATGCTCGTCTGCATTCCCAATCTGATCGTGGCCTACGTGGTCGCTGTCTCATCTGGACTCAGCGTGGCGGCCTCTCTCCTGTTGCCATGGTCCATGCTGCCTGATGTCGTGGATGACTTCAGATTGCAGAACCCCCACTCCAAGGGCCATGAGGCGATCTTCTATTCCTTTTATGTGTTCTTCACCAAGTTCGCTGCAGGGATTTCATTAGGAGTTTCTACACTTTGTCTTGAATTTGCCGGCTACAACACCGGAGCTTGCAGGCAGCCCCCCCTGGTGGCCTACACACTGAAACTGCTGATTGGAGCAGCACCTGTGGCTTTCATTGCCATTGGATTGATGATCCTGCTCCTGTACCCAATCACAGAGGAGGTCAGGCTGAAGAATATGATGGCCCTGGAGGAGCTCAGGTATGCCACCGACAACATGGCCTCAGCTCAGGAAGTCAAGTAA

Function

GO: NA

KEGG:

id description
K03292 TC.GPH; glycoside/pentoside/hexuronide:cation symporter, GPH family

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7148 lncRNA upstream 438069 34381868 ~ 34382099 (+) True G5808
TU7144 lncRNA upstream 527667 34292271 ~ 34292501 (+) True G5804
TU7123 lncRNA upstream 730046 34081826 ~ 34090122 (+) True G5788
TU7121 lncRNA upstream 739383 34078351 ~ 34080785 (+) True G5787
TU7098 lncRNA upstream 927025 33892474 ~ 33893143 (+) True G5768
TU7220 lncRNA downstream 59987 34894102 ~ 34895661 (+) True G5867
TU7229 lncRNA downstream 65521 34899636 ~ 35350027 (+) True G5875
TU7270 lncRNA downstream 466988 35301103 ~ 35306949 (+) True G5914
TU7378 lncRNA downstream 621561 35455676 ~ 35455887 (+) True G6002
TU7383 lncRNA downstream 631747 35465862 ~ 35466655 (+) True G6007
AMCG00004127 mRNA upstream 11746 34798389 ~ 34808422 (+) True AMCG00004127
AMCG00004126 mRNA upstream 95558 34695403 ~ 34724610 (+) True AMCG00004126
AMCG00004124 mRNA upstream 134378 34666392 ~ 34685790 (+) True AMCG00004124
AMCG00004125 mRNA upstream 181499 34631221 ~ 34638669 (+) True AMCG00004125
AMCG00004122 mRNA upstream 686556 34131126 ~ 34133612 (+) True AMCG00004122
AMCG00004138 mRNA downstream 33877 34867992 ~ 34868880 (+) False AMCG00004138
AMCG00004137 mRNA downstream 130351 34964466 ~ 34977633 (+) True AMCG00004137
AMCG00004139 mRNA downstream 338361 35172476 ~ 35173032 (+) True AMCG00004139
AMCG00004140 mRNA downstream 373416 35207531 ~ 35210874 (+) True AMCG00004140
AMCG00004141 mRNA downstream 405117 35239232 ~ 35248925 (+) True AMCG00004141
TU6919 other upstream 1688982 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 3925341 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 4548644 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 6716957 28062363 ~ 28103211 (+) True G4831
TU7209 other downstream 18748 34852863 ~ 34870320 (+) True AMCG00004138
TU7437 other downstream 918418 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 1438077 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 1939886 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 2027432 36861547 ~ 36891746 (+) True G6328

Expression Profile