RNA id: AMCG00004137


Basic Information

Item Value
RNA id AMCG00004137
length 3266
RNA type mRNA
GC content 0.48
exon number 16
gene id AMCG00004137
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 34964466 ~ 34977633 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGAACTGGTGGGATCCGTATTGAATCTGCTACTGGACATTTTGGAAGTGTGGAgatatatatttctttccttttcttcttttttcttcgTCCTCGATTTCCTACAGACCTTTGAAGTTGTAAACCATCCACGTCCAAGATGCCGCGGATTATGATCAAAGGCGGTGTCTGGCGCAACACCGAGGATGAAATCCTTAAAGCGGCTGTTATGAAATATGGCAAAAACCAATGGTCTCGAATTGCCTCATTGTTGCACAGAAAGTCTGCAAAGCAATGCAAAGCACGATGGTATGAGTGGCTTGACCCAAGCATTAAAAAGACAGAATGGTCACGTGAGGAAGAAGAGAAGCTCCTTCACTTGGCAAAGCTGATGCCCACACAATGGAGAACCATCGCACCCATCATTGGCAGAACTGCCGCCCAGTGCCTGGAGCATTATGAGTTTCTACTAGACAAAGCTGCCCAAAGAGACAATGAAGAAGACACTGCAGATGACCCTCGTAAACTCAAACCTGGAGAAATTGATCCCAACCCAGAGACCAAACCTGCGAGGCCTGACCCCGTGGACATGGACGAAGATGAACTTGAGATGCTTTCTGAGGCTAGAGCTCGTTTAGCCAACACTCAAGGTAAAAAGGCTAAGCGGAAAGCAAGAGAGAAACAGTTAGAGGAAGCCAGGCGACTTGCTGCCCTTCAAAAGCGCAGAGAACTGCGGGCTGCAGGCATTGAGATccagaagaagaggaagaagaaaagagGAGTGGATTACAATGCCGAGATCCCCTTTGAGAAGAAGCCGGCCCCTGGGTTCTACGACACGTCCATGGAGAACTACGAAGCCTTGGAGCCAGACTTCAAGAGGTTACGGCAGCAACACCTTGATGGAGAGTTGAGATTTGAAAAAGAGGACAGAGAACGTAAAAAAGACCGTCAGaagataaaaaagaagaaggaatcCGACCTCCCATCTGCCATTCTGCAGACCAGTGGTGTCTCAGAGTTTACTAAGAAAAGGAGCAAGTTAGTCCTCCCAGCCCCACAGatTACGGACTCTGAGCTGGAGGAGGTTGTGAAGCTGGGCCAGGCCAGCGAGGTCGCTCGTCAGACAGCCGAGGAGTCTGGGATCACCAACTCGGCCTCCAGTGCGCTGTTGTCTGAATATAACGTTACCAACAATGCCATGGCACTGCGCACCCCCAAGACCCCCGCCGCACAGGACCGGATTCTGCAGGAAGCGCAGAACTTGATGGCTCTGACGAATGTGGATACGCCTCTGAAAGGGGGCTTGAATACACCTCTACACGAGAGTGACTTTTCCGGAGTCACCCCTACGAGACAGGTGGTTCAGACACCGAACACAGTGCTGGCCACACCTTTCAGGACTCCCTCACACGGGGCAGAAGGCCTGACCCCCCGCAGTGGACTCACACCTAAGCCTGTAGTAGGAGTCACCCCTGGGAGAACTCCTCTCCGTGACAAACTCAACATTAATGCTGAAGACGGAATGGGGGATTTTAACGATCCATCGTATGCCAAGCACCTGGAAAGAGAATCCCGTGAGCATTTGAAAATGGGCCTGATGGGTTTGCCGGCACCCAAGAATGATTTTGAGATCGTCCTCCCGGAGAATGCAgagaaggagctggaggagcaTGAAACCGATGACAGTTTTGTAGAAGATGCCTCTGAAATCGAACTGCGCAAAAAGGTAATTAGAGATGCAGAACGTGAAAAGGAACTGAAGCAAAGACACACGTCTGTGCAGCGGGATTTACCCAGGCCCTCTGAAgtGAACGAGACCATTTTGAGACCTTTGAATGTTGAGCCACCTCTCACAGAGCTGCAGAAGGCTGAGGAGTTGATCAAGAAAGAGATGATCACAATGATTCACTTCGACAGCCTCCATCACCCCTTTACTGACGCTTTGACCAGAAAGGGCAAGGGCCCGGGATCTGGATCCAACAACGCGGAACACATTGCATATCTGGAAcagaatatatatgaaaaagttACTGAAGAAGATCTCAAAAAGGCGGATGAGGTGCTGGTGCAGGAGATGGAGGTGGTGAAGCATGGCATGGGTCACGGGGAGCTGTCCATCGACGCCTACAACCAGGTGTGGGAGGAGTGCTACAGCCAGGTGCTGTACCTCGCCGGGCAGGGCCGCTACACGCGCGCCAACCTGGCCAGCAAGAAAGACAGGATCGAGTCCCTGGAGAAGAAACTGGAGATCAATAGAGGTCACATGACCACTGAGGCCAAGAGGGCTGCGAAGAtggagaagaagatgaagatCCTGCTGGGAGGGTACCAGTCCAGAGCCATGGGGCTGATGAAGCAGCTCAGTGACCTGTGGGACCAGGTGGAGCAGGCCAACCTGGAGCTGCGCACCTTTGAGGAGCTGAAGAAACACGAAGACATGGCCATCCCTCGTAGACAAGAGGCTCTCAGAGAAGATGTCCAGAggcagcaggagagagagaaggagctgCAGCAGAGATACGCTGACCTGCTTCTGGAAAAAGAGTCCCTAATATCCTCCAAGTTTTAAAGCAAACTCCTGCAGTGAGAGCTGAGAGCGCCAATGATGCATGCATCCTGCATTTAACAGCCCAAGGAAAGCTGTGCTGTGATTTTTGTACTGGCTGCAGAATTAAAGCTTCTCGGTTgtcgttttatttttattttactgttcgTGCttaagaaatgttattttgatgGTCTTGCCTGATCCAACATTCCTACAGTCTGCTGTAGACCACCTGTATAACTACTTGATGTTCTCATTTTCTTTCACGTATGTAGGCTTTAGAGCTTTACTGTAATTTGGAGATTCCCTTATTGTCACAGAGCTGATGGACAGGAAAAAAGAACACAATTACTTTGTTATTTGATTTCAAAGCtgtaataaaattgtaattgtaataaattCTTATTTGAAAATAGCTTGGATAATGTTATTAGGTAACCTGCAGGGAAAAACCTTCCACTCCATTGTCTTTTTCTCTTACAGAGAAGTTTTTACTTTGCATTCATCATGAAGTGGATTCTCCTTTTCTGTAATtaaggtgttttttcttttgaataaaacaacaaatggaATATACCCCTTCAAAGGTATGGTAGTagcctttttaaaacattgtgtagTCCTTTTTCCAAGAAGCACAACTCACTTTACATGCACTTAATCCATATGTGCTGCCATGAACAGAAAATCAGGAATGTGCTACCTTTTGGTCAGGGTTTGTCACTTATTTAATTC

Function

GO:

id name namespace
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K12860 CDC5L, CDC5, CEF1; pre-mRNA-splicing factor CDC5/CEF1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7220 lncRNA upstream 68805 34894102 ~ 34895661 (+) True G5867
TU7148 lncRNA upstream 582367 34381868 ~ 34382099 (+) True G5808
TU7144 lncRNA upstream 671965 34292271 ~ 34292501 (+) True G5804
TU7123 lncRNA upstream 874344 34081826 ~ 34090122 (+) True G5788
TU7121 lncRNA upstream 883681 34078351 ~ 34080785 (+) True G5787
TU7270 lncRNA downstream 323470 35301103 ~ 35306949 (+) True G5914
TU7378 lncRNA downstream 478043 35455676 ~ 35455887 (+) True G6002
TU7383 lncRNA downstream 488229 35465862 ~ 35466655 (+) True G6007
TU7448 lncRNA downstream 842622 35820255 ~ 35820483 (+) True G6067
TU7461 lncRNA downstream 1049646 36027279 ~ 36045282 (+) True AMCG00004160
AMCG00004138 mRNA upstream 95586 34867992 ~ 34868880 (+) False AMCG00004138
AMCG00004128 mRNA upstream 130351 34820168 ~ 34834115 (+) True AMCG00004128
AMCG00004127 mRNA upstream 156044 34798389 ~ 34808422 (+) True AMCG00004127
AMCG00004126 mRNA upstream 239856 34695403 ~ 34724610 (+) True AMCG00004126
AMCG00004124 mRNA upstream 278676 34666392 ~ 34685790 (+) True AMCG00004124
AMCG00004139 mRNA downstream 194843 35172476 ~ 35173032 (+) True AMCG00004139
AMCG00004140 mRNA downstream 229898 35207531 ~ 35210874 (+) True AMCG00004140
AMCG00004141 mRNA downstream 261599 35239232 ~ 35248925 (+) True AMCG00004141
AMCG00004149 mRNA downstream 379789 35357422 ~ 35359998 (+) True AMCG00004149
AMCG00004145 mRNA downstream 420747 35398380 ~ 35406953 (+) True AMCG00004145
TU7209 other upstream 94146 34852863 ~ 34870320 (+) True AMCG00004138
TU6919 other upstream 1833280 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 4069639 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 4692942 30271210 ~ 30271524 (+) True G5245
TU5898 other upstream 6861255 28062363 ~ 28103211 (+) True G4831
TU7437 other downstream 774900 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 1294559 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 1796368 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 1883914 36861547 ~ 36891746 (+) True G6328
TU7800 other downstream 2021724 36999357 ~ 37000158 (+) True G6369

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00022377 True 2786 mRNA 0.52 16 NC_007128.7 5061135 ~ 5105922 (+)