RNA id: AMCG00004145


Basic Information

Item Value
RNA id AMCG00004145
length 4989
RNA type mRNA
GC content 0.41
exon number 4
gene id AMCG00004145
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 35398380 ~ 35406953 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAAAGCCGTGGTGAGAAAGTTGTTACAATCTTGTTGTTTTAAGTATTAACCGGTTCTGCCAGACTTCCATTTTGAAGTTATTGTCGTCGCAGTGGTTAAGACGGGTCAAAGTTTCAATAAAGCTGTCGGGCTGACTGGTACGGTGCTGTGTTTCCGTGACCTCGGCTGTGTCGAGCCACTGCTTCCTGATCATACCTCCGCTGGTTCAATCGCATAAGAAGGACCCCTCTGAAATAGGAGCACACATTGCAAAATGTGGCTGAGCTGCTTTTTGTTGGCCTTTGTGGTTTGGTGTGGACTGGGCATTTGCGACGACGCAGGGAATGGCACCGCTTTCCTGAACCGCTCCACTGAGCCACTACTGCTGGTCTCTTTCGATGGCTTCAGGGCGGACTACCTGAAGAACTATAGCTTCCCCAACCTGAAgaagtttttcttttcagatggCGTTCTTGTGGAGCACCTCACCAATGTCTTCATCACCAAGACCTTCCCCAATCATTACAGCATTGTCACCGGCCTTTATGCTGAAAGCCACGGGATGGTGGCCAGCAAAATGTATGACCCGATAACAAAGACGAAATTCTCGATCGCGAATGACACGGACCCCTTTTGGTGGAATGAGGCCACACCTATATGGCTATCGACACAGAAGGCGGGTTACAAGACCGCCACGGCCATGTGGCCTGGGACTGACATACGGATTCACAACAGGACGTCGACATACTACCTGCACTACAATCCCAATGTTACGTTTCAGGAGAGAGTGGGAAATCTCACCAAGCACCTGAGTGAGGAGGAGGCTGTGAGGTTTGCCGCGCTGTACTGGGAAGAGCCCGACTATTCGGGCCACAAGTATGGGCCCGACAACACCACCCAGATGGCCAAGGTTTTGAAAGAGGTCGATGATCACATCGGTTTCCTTGTTGACAAGCTGAATAAGTCAGGGCTGTGGggcaaaattaatgtaattataaccAGCGACCATGGGATGACCCAGTGTTCCCAGGACAGACTTATAAAGCTTGACCAATGTATTGGAGAGAAAAATTACACCCTGGTGGATCTCAGTCCTGTGACTGCTGTCATACCAGTGACAAACTCTACATATGTCTACAACATACTGAAGAATTGCCACCCCAACATGAAAGCTTACATGAAAGCTGAAATTCCCGATAGGCTGCATTACAGGAACAACGAACGGATCCAGCCAATCATTCTTGTTGCAGACGAGGGATGGACAATAGTTAAGAACGGACCGCTTCCACGGTTGGGTGACCACGGCTATGATAATGCATTACCCAGCATGCATCCCTTCCTAGCTGCCTATGGCCCTGCCTTCAGGAAGGGCTACCGGATGACCAGCTTCAACAGTGTGGACATTTACCCTCTAATGTGCCGTCTGCTGGGAATAGAGGAGATGCCCAACAACGGCAGCTTTGTTAATGCCCGCTGTCTGCTTGTCAGTGAGAAGTGCATCAATCTCCCTGAAGTGATTGGGTTAGTAATTGGGGTGTTGATGGTCCTGACCACTCTGACGTGCCTGTTCATTCTGATGAAGAACCGAGTGCCATCGGCTTCTCGCCCATTCGCTCGCCTCGAGCTGCAGGATGATGACGATGATCCACTGATTAGCTAGATGGATGTGTTTCAGAGCCGATGTGAAGCTGCTGCATTTGGCAATATCGCGATACAGTACAAGCGTTCTAGTGCACAGTGAATTTAACCCACCTGCAACCGAATGTGAAGGGCTTCTTTCAAATCTTAGTCCCAATCTGAGCTGTATTTATGCTGTCTGCTCTTAATTTAAGAGTGCATGGAGGTGGTATGACCATTTTGCACTTTCACAGTAGACTTCTGCCACTGTAAGTTCCCAACACGTACAAACTCATCCTCAAGGCTCCGTTTTCTGTCTGTCGACCATCGATCATGCCTGATATTTGAAGTTTAAGACTTGGACGGCTTGCAGTTTCTTACTGTACATCGCAGTTCACATTGTTGCATTTAATGGATCCAATCGTTAAGGATGcaattgtaatgtttaaatttgtaaataCTGCAATTGTCTGAGTGGATATAATTTGAGATTCCGCAAACTTTGTTCACTATCTGCTGTGggatttatttcaaatgatgcGTGTTTGGCAAAATTTTAACTACATTTCAAATTAGATGAATAATTGCGTACCCAATTGACTATGCATCTTTCTTAAAATTACAGGTTTATGCAAATAAGGACAAAAGCCCAGTTGCCTTCCCTGTTGAGTAACTAACTGAAGTTCTGTTAATTTAATTGGGAACCACCAGCAGCTTAGTAGGCAAACCCAGCACAGGACCCATGAAATAGAGAATAAGATAGTTTTTACCTCTTGAGGTGAGAGCCTAGAGTATGGAAGCAGGAGAGCAGAAAGAAATGTTTAGATGTATGGATTGTGAAGAGGCATGTTGAAAAGTGTATTGTAATGGTCAAGAATGTCCACAGCAGTCTCCTTACTAGCCCACACATATACATCAAGAAGCCCATTCGCTCAAAAGCCCATGAAAGGCATCTGAATTTACTTGAATTCTTTGTAGAAATGTAGGTTATCTAACAGCTGTCATTTCTAGCAAGTctgcttttgtatttataattttcctCTTATTTCTTATACTTCCAAGTCAATATTGTGAAAGTGGTTTTCCAGTACGTTGACTAGGTCAGGGAAGTTACATTTTAGAAATCACTCCTAATGCACAAATGGCTTGTGTTCTTGGAGGATCTCATCGCTTCGGTGCAATTTGGTTTGTTGAAATATTCCCTTTAGTCACCGGTTGTAAATGTATCATTGATTGGACAGTCTGCAATGTGATGTACAtttctattgtttatttttatatggagTTATGCTGGGCTATGGGTTACGTACTATAGGTCAGCCCAGAGCTCTCTTGCACATTGCTGTGGTATACAGCTGAATATTTATACTTCGGGAGATCTTAAAATCCTGCAACCCTAAATTGGAAATAATGCACAGCGACGCTAATGCAGTAGCTGCTGCTGCCTGGCTTTGAAGGACTAGCAATTGCATTACTACCAGAAAGGAAGCAATACAGCCAATGTAACTCATGTTTGCTAGCATCTTCttgaacacaacacaacaattgGCCATTTTGCTACAAGTACTGGGAAATCTCCTTCCAAAGCTTtagtatattttcttttaattttctaCCTTGCAAAGGGCACTgttctttatatataatgtgtacatATGGAATTTGGTTTGCTGCTCGATTTGACTTTTCTACTTTGGCACTGATAGATTTTAATAGCATGGTTTATAATGGTCTTATGTTGATGTGAGAACTGtaggaattcaaaatataaaatgtgttcagGCCTCTAAATGTGAACTCCCATGAGTTTTATAtgaatgttttcttatttaataaaatctcCATTTTATGAATCCGTTTCTTCCAGAAAGTGCACATTGCGTGTGCAACACAGATAAATGTACTGaagagctttatttatttttattcactgaggtacaaagttttgttttggctgtattttcaatttaaaaatagtaatttgCTTTAGTCAGACTGAACAGGTTAATTCTAGTATATTACTCCTACCATTCTGCCTTAAATTCATACTTCATAGCAGATAAAAGCTTCTAATGTGTGTTCCCCTTAATCCTTGTTGGTTATGTattctttgtaaatattttgtgtgtaaaatCACTTCTCCTGTAATGGTTTTGGTATTGTGCACGATTTCACTTTATTCAGTACCTTCCTGGGGTTGAAAATCAATTTGAATggattttgttaaattatatcaaatatacGGTGTACAATGTTTCAGGCAGTATGACTTTCATATGCTAATTGTGAAGGATAAAGAGTTAATTTGTACATTGTGTACTATGTACAGAGCACATCTAGCACCTGATATGGGGGGGGAAGTAATGACAGATTGGTGTGGATATAATGGCATGATTGTGCTGACATGGGACCTTTTGCTTGGCTAGCATCCGTGTTTCACCATGTGGACACTGATTTGCCCATTTTCAGGATTATGGAACATATGGATATGATTCTGCTGCCTGATGCATAAATCAACATGTAACATGAACCTGTCAAATGTACTGTagttctttattttctatatgcCCTCCCTTACatagagaaatacaaattagaaCAATGAATTATGTTATGTTTGTTTCCTCTTACATGTAGCATTAAACGGTagaaccccccacacacacacacacaattttaaatccTCCTAAACATGGATAACTGCTAAATTGTggttttaaccattttaatttgcttatgtaaatatagtatttttattatttctttcatcTGTTGCTATGCATTACATCTTTCATTTGATCTGGTGTTGCTTGCAAAAATGTGTACACCATGTGAAGAACATGggatattgtttgtgtgttcttGGTTTTCATGACTGTtagtaattgcattttatttttattcatgtatacaTTGTgtgatcattatttaaattatttgtgtcCCTGACCCCAGGGATTTTATGTATTCCTGAAGTCATTAACCCTTAGAAACCCCCCTGTGACATGTTTGTATAAATtgggataatatatttttgtcaggcctgttaaatgtttgtgactTATGCATCGCACTGGGTCCTTAGGGGTTaatgttactgtattttaagAGTGCTTGCTTATGGAGGAATAAAACAAGGGTTGCGTTTGTTGCTGGCTTTGTGGTGAATAAAGGTACTGCTGTTTATAAACTTGTAATATGACACTGCTTTTGATTCATTGGTAGAGGTTAAGGGCCATCTATCAGTCGGTTTAAAATCATAGCTCATGTATAAGGTAGCCCATTGATACCCATGATGTCCAACAGAAAATACTAGCTACACTGTTCTATATATTAGGTAACTGGGTGAGCTTCCCTCCACCAGTAATGGATTGTACCAGATGCACTATGGC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007596 blood coagulation biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0047710 bis(5'-adenosyl)-triphosphatase activity molecular_function

KEGG:

id description
K18424 ENPP4; ectonucleotide pyrophosphatase/phosphodiesterase family member 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7229 lncRNA upstream 48353 34899636 ~ 35350027 (+) True G5875
TU7270 lncRNA upstream 91431 35301103 ~ 35306949 (+) True G5914
TU7220 lncRNA upstream 502719 34894102 ~ 34895661 (+) True G5867
TU7148 lncRNA upstream 1016281 34381868 ~ 34382099 (+) True G5808
TU7144 lncRNA upstream 1105879 34292271 ~ 34292501 (+) True G5804
TU7378 lncRNA downstream 48723 35455676 ~ 35455887 (+) True G6002
TU7383 lncRNA downstream 58909 35465862 ~ 35466655 (+) True G6007
TU7448 lncRNA downstream 413302 35820255 ~ 35820483 (+) True G6067
TU7461 lncRNA downstream 620326 36027279 ~ 36045282 (+) True AMCG00004160
TU7487 lncRNA downstream 754653 36161606 ~ 36165870 (+) True G6102
AMCG00004149 mRNA upstream 38382 35357422 ~ 35359998 (+) True AMCG00004149
AMCG00004141 mRNA upstream 149455 35239232 ~ 35248925 (+) True AMCG00004141
AMCG00004140 mRNA upstream 187506 35207531 ~ 35210874 (+) True AMCG00004140
AMCG00004139 mRNA upstream 225348 35172476 ~ 35173032 (+) True AMCG00004139
AMCG00004137 mRNA upstream 420747 34964466 ~ 34977633 (+) True AMCG00004137
AMCG00004150 mRNA downstream 44118 35451071 ~ 35455522 (+) True AMCG00004150
AMCG00004151 mRNA downstream 50201 35457154 ~ 35458783 (+) True AMCG00004151
AMCG00004157 mRNA downstream 236043 35642996 ~ 35684393 (+) True AMCG00004157
AMCG00004158 mRNA downstream 345497 35752450 ~ 35766180 (+) False AMCG00004158
AMCG00004163 mRNA downstream 428820 35835773 ~ 35837710 (+) True AMCG00004163
TU7209 other upstream 528060 34852863 ~ 34870320 (+) True AMCG00004138
TU6919 other upstream 2267194 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 4503553 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 5126856 30271210 ~ 30271524 (+) True G5245
TU5899 other upstream 7330594 28062674 ~ 28067786 (+) False G4831
TU7437 other downstream 345580 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 865239 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 1367048 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 1454594 36861547 ~ 36891746 (+) True G6328
TU7800 other downstream 1592404 36999357 ~ 37000158 (+) True G6369

Expression Profile