RNA id: AMCG00004151



Basic Information


Item Value
RNA id AMCG00004151
length 1081
RNA type mRNA
GC content 0.44
exon number 2
gene id AMCG00004151
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 35457154 ~ 35458783 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AAAGAAGTTAAGGTATATTTcacaattacacatttgaaaTCTGCAAAGTATAGAGCACTGTCACGTACAAAAAGAtctatggaaaaaaaagacGTTTGTGATTCTTaggtgcctgtgtgtgtgtgtatacatatacatttaaatataaatcaacacTTGTGGATCTGTTAATTCAGCTGCAATGGAGCTGTCCTGGAACTTTAGGTTTGGGATTGTTATCCTGGGTGACTCGGCTGTAGGGAAATCTTCCCTCTTGCATCGCTACACGGAAGGCACATTTGAGGAGTCTAGGCAGTCTCCTCTGGGCATTGACTTTAAAGTGAAGCACCTAGACTTCGACCCAGGGGTCATGATCAAACTCCTGCTCTGGGACACAGCTGGGCAGGAGAGATTCAGGTCGATCTCGAAGTCCTACATGAGAAATTCTGTGGGCTGCCTCATGGTGTTTGATATCTCCCAGAGGAAGACCTTTGAGAATGTGCGGAGCTGGCACACGGAGGTTGTGGAGTATGTGAAACCAGCCACTATGGTATTCACCCTAGTCGGGCACAAGAGTGACCTTCATGAACTCCGAGAAGTGAGCGAACATGAGGCGGAGGCCCTGGCGAGGAGCCTGGGCATGACAGGTTACATAGAGGTCTCCTCCAAGAACAATATGAATGTGGACCTTGCCTTTGAGACTCTCACCAAAGAAATCTACAACCAGTTTCACCTGGGGCAGATTCCTATGCATGACGGCTGGTATGGATTGACAGTTGGCACTCCACTGAAGTTCGAGAACACCGAGGAGCCAAAACCCAAGACGTCTGGCTGTGGTTGCGGGTGAAACCAGGAAGATCAGTTTGTTGTTATGGTAACCTTTTTAAGGCTGGACCCTGATTATTTTCACCTCTAAGCTTCATACTGTTGAATATTTTTTCAAGTaggctgctgttttgtttttattttcttgtgttttgtttggcatGTGCAtggtgtttttatgtatatatgtttatgtttgcCATGTATTCACAGGATTGgggaaaatgtttcaaaacctCGTTATGATCAATAAACTGCACAAAGGATTTTAGatgga

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU7378 lncRNA upstream 1267 35455676 ~ 35455887 (+) True G6002
TU7229 lncRNA upstream 107127 34899636 ~ 35350027 (+) True G5875
TU7270 lncRNA upstream 150205 35301103 ~ 35306949 (+) True G5914
TU7220 lncRNA upstream 561493 34894102 ~ 34895661 (+) True G5867
TU7148 lncRNA upstream 1075055 34381868 ~ 34382099 (+) True G5808
TU7383 lncRNA downstream 7079 35465862 ~ 35466655 (+) True G6007
TU7448 lncRNA downstream 361472 35820255 ~ 35820483 (+) True G6067
TU7461 lncRNA downstream 568496 36027279 ~ 36045282 (+) True AMCG00004160
TU7487 lncRNA downstream 702823 36161606 ~ 36165870 (+) True G6102
TU7620 lncRNA downstream 1037057 36495840 ~ 36520594 (+) True G6224
AMCG00004150 mRNA upstream 1632 35451071 ~ 35455522 (+) True AMCG00004150
AMCG00004145 mRNA upstream 50201 35398380 ~ 35406953 (+) True AMCG00004145
AMCG00004149 mRNA upstream 97156 35357422 ~ 35359998 (+) True AMCG00004149
AMCG00004141 mRNA upstream 208229 35239232 ~ 35248925 (+) True AMCG00004141
AMCG00004140 mRNA upstream 246280 35207531 ~ 35210874 (+) True AMCG00004140
AMCG00004157 mRNA downstream 184213 35642996 ~ 35684393 (+) True AMCG00004157
AMCG00004158 mRNA downstream 293667 35752450 ~ 35766180 (+) False AMCG00004158
AMCG00004163 mRNA downstream 376990 35835773 ~ 35837710 (+) True AMCG00004163
AMCG00004160 mRNA downstream 568498 36027281 ~ 36045282 (+) False AMCG00004160
AMCG00004161 mRNA downstream 608797 36067580 ~ 36073621 (+) True AMCG00004161
TU7209 other upstream 586834 34852863 ~ 34870320 (+) True AMCG00004138
TU6919 other upstream 2325968 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 4562327 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 5185630 30271210 ~ 30271524 (+) True G5245
TU5899 other upstream 7389368 28062674 ~ 28067786 (+) False G4831
TU7437 other downstream 293750 35752533 ~ 35766180 (+) True AMCG00004158
TU7524 other downstream 813409 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 1315218 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 1402764 36861547 ~ 36891746 (+) True G6328
TU7800 other downstream 1540574 36999357 ~ 37000158 (+) True G6369

Expression Profile