RNA id: AMCG00004158


Basic Information

Item Value
RNA id AMCG00004158
length 1280
RNA type mRNA
GC content 0.41
exon number 4
gene id AMCG00004158
representative False

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 35752450 ~ 35766180 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGTGAGTCATGTGTGTGGCGTGTCAACGAGGGCGGGGCTTCAGCTGATGGGCTGCTGTGATTGGTCGCCACGGTACCAGCTAGACAGGCAGCGGCCCCCAGAGGTGGGCAAGAGAGTGTGCCTGTGGACAGTGCAGGAGGTGTACGACTGGGTGAGAGTGTGCTACCCTTCCCGCCAGGCCGCTTTCCTCCTAGCAATTGTCAATCATTCTATATCAgGTCGGGCTCTTCTGAGGTTAACCGATAGCAAGCTTGAGAGGATGGGTGTTGGGCAGGAGCAGCACAAGGAGATTCTCCATGATGTGATGATCCTGAGAGTACACGAGGAGCTGGAAAACCTCAATGACATTGTCTCTGactGTTTCACAACATGATCAGGCATACACCaagaaggatttattttatgcacGTATCTGCTCTTCCATCTGAAAGAGAATGTTGGCCTTCAGAACCAGTGACCTGAGGAACACATGCAGTTGATTCCCAGTGCTGCGCTCTCTGCTCGGCTGGCTCTATGCATCAAGTGCCTTTTCCTagctttgtattgctcttactTTGTAATACTCAATAAACTGCCTGGCTGCTTTTATAAATGGTCGGACCAATAACTAACAAAGGGGAAACATCCCATTTAACAAGGGATGTAGTGCAGCCTTCATCTGGACAAAATGCCATTATCCGAGATACAGCACTGATTTGGGATAGTTAATGGTTCTGTGAATTACTCTCTTGAGATCCTGTCTGAATTAAAATGGGGAGTAGGTAAATTAGTTCAGAGATTCGAACATTTGCTCATGGATATAATTTAGATAATAGCTGCATGTTACTTTGTATCTATTAAGGAATAGTAGGGGATTTAATGAGAAATATTTTAAGGGAGTTGTTTAGTCAGAGAGTTAAAACCCTTTATCTGCACTTTATGCCCTGCTTACTGTGGCAgtggggaaaaagaaaacaagatgtggttttttttttcctttatgtgttagttttaacatttgtacattttaccaCTGCTTTAGGATGCCTCATGTGGTATCATGGGGTTCAAATCCAGATTTGATTACTGTTATGTTACTTAAACATAGGTATGAGCAGCACCCTCAATAATTTACaagcatttaaaagtaatttcacaGTTATATGAAGTTATGATTTTCAGTTTACTGTGAATatctattgttttttatttttattttacttaaacacATATTGATTCCCTGACATTTAGATTAAAACAATTGATTGATGTAGTCAATCCATgctttattgaataaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU7383 lncRNA upstream 285795 35465862 ~ 35466655 (+) True G6007
TU7378 lncRNA upstream 296563 35455676 ~ 35455887 (+) True G6002
TU7229 lncRNA upstream 402423 34899636 ~ 35350027 (+) True G5875
TU7270 lncRNA upstream 445501 35301103 ~ 35306949 (+) True G5914
TU7220 lncRNA upstream 856789 34894102 ~ 34895661 (+) True G5867
TU7448 lncRNA downstream 54075 35820255 ~ 35820483 (+) True G6067
TU7461 lncRNA downstream 261099 36027279 ~ 36045282 (+) True AMCG00004160
TU7487 lncRNA downstream 395426 36161606 ~ 36165870 (+) True G6102
TU7620 lncRNA downstream 729660 36495840 ~ 36520594 (+) True G6224
TU7622 lncRNA downstream 760488 36526668 ~ 36539067 (+) True G6225
AMCG00004157 mRNA upstream 68057 35642996 ~ 35684393 (+) True AMCG00004157
AMCG00004151 mRNA upstream 293667 35457154 ~ 35458783 (+) True AMCG00004151
AMCG00004150 mRNA upstream 296928 35451071 ~ 35455522 (+) True AMCG00004150
AMCG00004145 mRNA upstream 345497 35398380 ~ 35406953 (+) True AMCG00004145
AMCG00004149 mRNA upstream 392452 35357422 ~ 35359998 (+) True AMCG00004149
AMCG00004163 mRNA downstream 69593 35835773 ~ 35837710 (+) True AMCG00004163
AMCG00004160 mRNA downstream 261101 36027281 ~ 36045282 (+) False AMCG00004160
AMCG00004161 mRNA downstream 301400 36067580 ~ 36073621 (+) True AMCG00004161
AMCG00004159 mRNA downstream 348321 36114501 ~ 36128960 (+) True AMCG00004159
AMCG00004165 mRNA downstream 367826 36134006 ~ 36158549 (+) True AMCG00004165
TU7209 other upstream 882130 34852863 ~ 34870320 (+) True AMCG00004138
TU6919 other upstream 2621264 33130120 ~ 33131186 (+) True G5642
TU6554 other upstream 4857623 30887995 ~ 30894827 (+) True AMCG00004056
TU6431 other upstream 5480926 30271210 ~ 30271524 (+) True G5245
TU5899 other upstream 7684664 28062674 ~ 28067786 (+) False G4831
TU7524 other downstream 506012 36272192 ~ 36274930 (+) False AMCG00004167
TU7741 other downstream 1007821 36774001 ~ 36774523 (+) True G6314
TU7756 other downstream 1095367 36861547 ~ 36891746 (+) True G6328
TU7800 other downstream 1233177 36999357 ~ 37000158 (+) True G6369
TU8679 other downstream 5693396 41459576 ~ 41507231 (+) True G7094

Expression Profile